Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

23688397 .. 23688684

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30421.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGAAATTGCAGGTGGCTAAGCAGCCCGATCCAGATGAACCTGAGGTGTCCGGTGAACTAGTTCATTTGGAGATGGAATTACAGAGCCATAGAGACGAGACAAGTGCTCGTCTCGATGCTATGCACAGCGACATGAGATCTACTCTAGCAGATTTCAGATCTTCGATTGCTGAGGAGATCCGGCAGCAAATGAGTTCATTCACTCAGAGTCAGCTCGGGCCCACGGTTGTTGCTGCAAGCTTGGGTCAGCAACTCTTCAAGGAGTGCAAGGGGAGAACCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

5.06

Isoelectric Point (pI)

67.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4
Acc36I	ACCTGC	1 cut(s)	4
AclWI	GGATC	2 cut(s)	26, 175
AgsI	TTSAA	1 cut(s)	262
AhlI	ACTAGT	1 cut(s)	61
AluBI	AGCT	2 cut(s)	217, 243
AluI	AGCT	2 cut(s)	217, 243
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	3 cut(s)	90, 95, 119
AlwI	GGATC	2 cut(s)	26, 175
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	221
ApaI	GGGCCC	1 cut(s)	225
ApeKI	GCWGC	3 cut(s)	25, 187, 236
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	221, 222
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	37, 199, 223
BccI	CCATC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	90, 95, 119
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	2 cut(s)	62, 149
BfuAI	ACCTGC	1 cut(s)	4
BglII	AGATCT	2 cut(s)	140, 161
BisI	GCNGC	3 cut(s)	26, 188, 237
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	3 cut(s)	27, 189, 238
Bme1390I	CCNGG	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	221, 222
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	36, 165, 221
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	37, 199, 223
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	54, 184, 282
BsmAI	GTCTC	3 cut(s)	90, 95, 119
BsmBI	CGTCTC	2 cut(s)	90, 119
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	112, 225
Bsp143I	GATC	4 cut(s)	31, 140, 161, 180
Bsp1720I	GCTNAGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	3 cut(s)	37, 166, 220
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	2 cut(s)	26, 175
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	4 cut(s)	31, 140, 161, 180
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	21, 45, 174, 207
BstDSI	CCRYGG	1 cut(s)	225
BstKTI	GATC	4 cut(s)	34, 143, 164, 183
BstMAI	GTCTC	3 cut(s)	90, 95, 119
BstMBI	GATC	4 cut(s)	31, 140, 161, 180
BstSCI	CCNGG	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	37, 199, 223
BstX2I	RGATCY	3 cut(s)	140, 161, 180
BstYI	RGATCY	3 cut(s)	140, 161, 180
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	221, 222
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	6 cut(s)	20, 28, 90, 217, 223, 243
CviKI_1	RGCY	6 cut(s)	20, 28, 90, 217, 223, 243
DdeI	CTNAG	4 cut(s)	21, 45, 174, 207
DpnI	GATC	4 cut(s)	33, 142, 163, 182
DpnII	GATC	4 cut(s)	31, 140, 161, 180
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	2 cut(s)	90, 119
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	93, 125, 137
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	26, 188, 237
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	26, 188, 237
FspBI	CTAG	2 cut(s)	62, 149
GluI	GCNGC	3 cut(s)	26, 188, 237
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	3 cut(s)	54, 184, 282
Hin1II	CATG	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	54, 184, 282
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	161, 210
Hpy188III	TCNNGA	2 cut(s)	35, 116
Hpy8I	GTNNAC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	13, 127, 239, 270
HpyF3I	CTNAG	4 cut(s)	21, 45, 174, 207
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	31, 140, 161, 180
LpnPI	CCDG	4 cut(s)	48, 57, 67, 197
Lsp1109I	GCAGC	3 cut(s)	37, 199, 223
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	62, 149
MalI	GATC	4 cut(s)	33, 142, 163, 182
MboI	GATC	4 cut(s)	31, 140, 161, 180
MboII	GAAGA	2 cut(s)	156, 250
MflI	RGATCY	3 cut(s)	140, 161, 180
MhlI	GDGCHC	2 cut(s)	112, 225
MluCI	AATT	2 cut(s)	8, 80
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	40, 169
MroXI	GAANNNNTTC	1 cut(s)	63
MspI	CCGG	3 cut(s)	54, 184, 282
MspR9I	CCNGG	1 cut(s)	283
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	4 cut(s)	31, 140, 161, 180
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	63
PkrI	GCNGC	3 cut(s)	27, 189, 238
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	223
PspOMI	GGGCCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	221, 222
PsuI	RGATCY	3 cut(s)	140, 161, 180
SatI	GCNGC	3 cut(s)	26, 188, 237
Sau3AI	GATC	4 cut(s)	31, 140, 161, 180
Sau96I	GGNCC	2 cut(s)	221, 222
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	112, 225
SetI	ASST	5 cut(s)	18, 46, 51, 219, 245
SfaNI	GCATC	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	2 cut(s)	8, 80
SspMI	CTAG	2 cut(s)	62, 149
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	117, 167
TasI	AATT	2 cut(s)	8, 80
TseI	GCWGC	3 cut(s)	25, 187, 236
TspDTI	ATGAA	3 cut(s)	54, 56, 189
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	2 cut(s)	62, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.