Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005979.1

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Reverse (-)

88651 .. 89476

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005979.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggtgttgaaaagttcattggcactgaggtcaacatattcaagatcagggaatgactggaatgagagctcatgtagcgtaccttttataccagaattggtaaggtttatccggttgacacttccggcagcattgcatgaaataccggtccaaacattgcatgcacctgatgaattggtggcgtttccggtgagggaagtccacgagagccactcggtcatggttaagctcaaggggggtgggaaaccctcctctccgccacatgtctctgacgcgctatccttctccggcgagcttgtccacctcaaatatgagctgcaagcacatcgggaggagactagctcaagactcgatgagatgcaggcttccttacaggaagccttggccacttcgttgaccaatttcaagtccatgctaatggatgagttcaagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

145

Amino Acids

16.16

Weight (kDa)

5.95

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	384
AfaI	GTAC	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	262
AgeI	ACCGGT	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	10, 42, 406, 430
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	69, 229, 295, 316, 342
AluI	AGCT	5 cut(s)	69, 229, 295, 316, 342
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	271, 329
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	128, 316
AsiGI	ACCGGT	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	140, 303
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BcoDI	GTCTC	2 cut(s)	271, 329
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	129, 317
BlsI	GCNGC	2 cut(s)	130, 318
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	4 cut(s)	197, 229, 326, 358
BpuEI	CTTGAG	2 cut(s)	215, 328
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	3 cut(s)	111, 145, 187
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	2 cut(s)	131, 155
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	427
BseMI	GCAATG	2 cut(s)	131, 155
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	241, 347
BseXI	GCAGC	2 cut(s)	140, 303
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	5 cut(s)	112, 125, 146, 188, 288
BsmAI	GTCTC	2 cut(s)	271, 329
BsnI	GGCC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	131, 155
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	203
BstC8I	GCNNGC	4 cut(s)	162, 293, 321, 363
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	2 cut(s)	271, 329
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	164, 266
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	140, 303
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	4 cut(s)	162, 293, 321, 363
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	6 cut(s)	72, 137, 161, 220, 263, 412
CviJI	RGCY	9 cut(s)	69, 210, 229, 295, 316, 342, 365, 380, 386
CviKI_1	RGCY	9 cut(s)	69, 210, 229, 295, 316, 342, 365, 380, 386
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	6 cut(s)	75, 140, 164, 223, 266, 415
FaiI	YATR	9 cut(s)	37, 73, 89, 138, 162, 221, 264, 312, 413
FatI	CATG	6 cut(s)	71, 136, 160, 219, 262, 411
Fnu4HI	GCNGC	2 cut(s)	129, 317
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	129, 317
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	129, 317
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	5 cut(s)	112, 125, 146, 188, 288
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	6 cut(s)	75, 140, 164, 223, 266, 415
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	3 cut(s)	33, 117, 396
HindII	GTYRAC	3 cut(s)	33, 117, 396
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	5 cut(s)	112, 125, 146, 188, 288
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	5 cut(s)	33, 117, 202, 301, 396
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	42, 329, 345
Hpy8I	GTNNAC	5 cut(s)	33, 117, 202, 301, 396
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	136, 160, 164, 319, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	75, 140, 164, 223, 266, 415
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	44
Lsp1109I	GCAGC	2 cut(s)	140, 303
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	339
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	3 cut(s)	95, 173, 400
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	21, 186, 259, 262, 314, 325
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	5 cut(s)	112, 125, 146, 188, 288
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	6 cut(s)	75, 140, 164, 223, 266, 415
NspI	RCATGY	2 cut(s)	164, 266
PaeI	GCATGC	1 cut(s)	164
PciI	ACATGT	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	130, 318
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PscI	ACATGT	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	129, 317
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	230, 343
SmoI	CTYRAG	2 cut(s)	230, 343
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	3 cut(s)	95, 173, 400
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	381
TaqI	TCGA	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	95, 173, 400
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	128, 316
TspDTI	ATGAA	3 cut(s)	6, 153, 186
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	148
XceI	RCATGY	2 cut(s)	164, 266
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.