RchiOBHm_Chr2g0141281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006394
Physical Location & Seq
Forward (+)
58834172 .. 58837560
3389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51159

Sequence Viewer

Length: 375 bp
ATGGAAAAAAAAAAAAAAACAGAATGGTCAAACTCTCCTCACTTCCTCCCCTCTCAAAATCTCCTCACTCTCTCCCTCTCCCTCTCCCTCTCCTCTCAAAAGCTCAGCGATAGTCTGAACCCTAACCATGGCCGCTGCTCCTCCTCCGCCGCCGCCAGCCTTCCATCCTCGTCTTCTTCGGCGGGACCGCCTTCAACGGCGTCGTCGAGGCTAGGAGCTCGAGAATTTAACCATTCGCGTCGCTCACGTGCTTCCTGTTTCCGACGACGGAGGAATCACCGCCTAGATTGTCCGCGTCCTCGGTGGTCCGGCCGATCAAAGCACCTCCGAGGCGGTCGCCGTCCGGCAATTGCTTGGTCATTGTTTACCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

11.96

Isoelectric Point (pI)

86.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 238, 295
AciI CCGC 9 cut(s) 133, 147, 150, 153, 182, 188, 280, 293, 333
AcoI YGGCCR 2 cut(s) 130, 310
AcsI RAATTY 1 cut(s) 224
AcvI CACGTG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 195
AluBI AGCT 2 cut(s) 103, 218
AluI AGCT 2 cut(s) 103, 218
Alw21I GWGCWC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 2 cut(s) 130, 310
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 185, 306
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 2 cut(s) 185, 306
BanII GRGCYC 1 cut(s) 220
BbrPI CACGTG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 213, 324
BfaI CTAG 2 cut(s) 212, 284
BisI GCNGC 4 cut(s) 133, 136, 150, 153
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 4 cut(s) 134, 137, 151, 154
Bme18I GGWCC 2 cut(s) 185, 306
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 185, 306
BmiI GGNNCC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 127, 299, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 127, 299, 328
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 5 cut(s) 27, 53, 82, 130, 133
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 122
Bsh1236I CGCG 2 cut(s) 238, 295
Bsh1285I CGRYCG 2 cut(s) 313, 337
BshFI GGCC 2 cut(s) 132, 312
BsiEI CGRYCG 2 cut(s) 313, 337
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 309, 344
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 132, 312
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 314
Bsp1720I GCTNAGC 1 cut(s) 104
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 9 cut(s) 133, 147, 150, 153, 182, 188, 280, 293, 333
BspANI GGCC 2 cut(s) 132, 312
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 238, 295
BspLI GGNNCC 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 127, 299, 328
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 164
BstFNI CGCG 2 cut(s) 238, 295
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMCI CGRYCG 2 cut(s) 313, 337
BstUI CGCG 2 cut(s) 238, 295
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 165
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 2 cut(s) 132, 312
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 185, 306
CseI GACGC 3 cut(s) 189, 227, 284
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 103, 132, 159, 211, 218, 312
CviKI_1 RGCY 6 cut(s) 103, 132, 159, 211, 218, 312
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 130, 310
EagI CGGCCG 1 cut(s) 310
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 218
EclXI CGGCCG 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 185, 306
Eco52I CGGCCG 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 218
Eco72I CACGTG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 131
FaiI YATR 1 cut(s) 129
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 133, 136, 150, 153
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 133, 136, 150, 153
FspBI CTAG 2 cut(s) 212, 284
GluI GCNGC 4 cut(s) 133, 136, 150, 153
HaeIII GGCC 2 cut(s) 132, 312
HapII CCGG 2 cut(s) 309, 344
HgaI GACGC 3 cut(s) 189, 227, 284
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 274
HpaII CCGG 2 cut(s) 309, 344
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 117, 263, 329
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 5 cut(s) 205, 208, 243, 267, 270
HpyAV CCTTC 2 cut(s) 170, 201
HpyCH4IV ACGT 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 247
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 2 cut(s) 143, 215
LpnPI CCDG 4 cut(s) 169, 268, 322, 357
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 2 cut(s) 212, 284
MaeII ACGT 1 cut(s) 247
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 2 cut(s) 165, 168
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 224, 348
MmeI TCCRAC 1 cut(s) 286
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 2 cut(s) 309, 344
MunI CAATTG 1 cut(s) 348
MvnI CGCG 2 cut(s) 238, 295
NcoI CCATGG 1 cut(s) 127
NdeII GATC 1 cut(s) 314
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 4 cut(s) 134, 137, 151, 154
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 220
PspCI CACGTG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 185, 306
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 4 cut(s) 133, 136, 150, 153
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 185, 306
SduI GDGCHC 1 cut(s) 220
SetI ASST 4 cut(s) 105, 220, 250, 327
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 2 cut(s) 185, 306
SlaI CTCGAG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 2 cut(s) 224, 348
SsiI CCGC 9 cut(s) 133, 147, 150, 153, 182, 188, 280, 293, 333
SspMI CTAG 2 cut(s) 212, 284
SstI GAGCTC 1 cut(s) 220
StyI CCWWGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 206, 220
TasI AATT 2 cut(s) 224, 348
TauI GCSGC 3 cut(s) 135, 152, 155
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 1 cut(s) 135
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 185, 306
XapI RAATTY 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 2 cut(s) 212, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.