Rmu_sc0006601.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006601.1
OG0006394
Physical Location & Seq
Reverse (-)
14031 .. 16404
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006601.1_g000004.1.cds

Sequence Viewer

Length: 762 bp
atgattctgatcatgaaccctgatcaaacagggatgaagaatgatgggcagccgccggcaatggatctgaggaggcgacaaagccggtgtaatcgactgtggtctgggcgtaggggtggtggcgataccctggagccatcggagatcggagatcagagatcggaaatcgcagagcagagtttagggtttagtctgaaccctaaccatggccgctgctcctcctctgcggctgccagccttccatcctcgtcttcttcagtaggaccgccttcaacggtgtcgctgcgtctgggctacgccacatgggtgcatcgagatgaaaccactgctcgtcttgccgatttgcaggctaacatccaggactccgtggctaacaccttagctaggttcaaatcggttctcatggctgagatccagcagctccaactcactaagcaaggtagcactacctttgctcagccggatgggaccgtttggttcggatctgtaccctctccggtgattccacagaaggaaacctccattcctgaaggatcgtcctctacgatggcgagttttgaagttagctcctctcttattccctctttgagtttgggtactgatgatgtattgttcgggtttatcagtgagccacctatgactgtggttaatgctacatctgtagtacataatagtgggattatggatctaaataagcctgtgctcagtcaacttgactctcagtgtgtccatagcagtactgctatggctccgctagcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

26.93

Weight (kDa)

5.34

Isoelectric Point (pI)

64.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 53, 211, 227, 266, 752
AclWI GGATC 5 cut(s) 72, 406, 490, 541, 693
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 240, 549
AfaI GTAC 4 cut(s) 489, 598, 666, 739
AfiI CCNNNNNNNGG 2 cut(s) 206, 384
AgsI TTSAA 3 cut(s) 273, 391, 560
AjnI CCWGG 2 cut(s) 129, 357
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 3 cut(s) 383, 421, 567
AluI AGCT 3 cut(s) 383, 421, 567
Alw21I GWGCWC 1 cut(s) 705
AlwI GGATC 5 cut(s) 72, 406, 490, 541, 693
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 5 cut(s) 49, 213, 230, 283, 418
AspS9I GGNCC 2 cut(s) 263, 468
AsuHPI GGTGA 1 cut(s) 511
AsuNHI GCTAGC 1 cut(s) 754
AvaII GGWCC 2 cut(s) 263, 468
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 5 cut(s) 61, 200, 217, 270, 430
BccI CCATC 5 cut(s) 38, 145, 250, 458, 541
BciT130I CCWGG 2 cut(s) 131, 359
BclI TGATCA 2 cut(s) 9, 22
BfaI CTAG 3 cut(s) 384, 755, 760
BfmI CTRYAG 1 cut(s) 660
BisI GCNGC 8 cut(s) 50, 53, 211, 214, 228, 231, 284, 419
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 8 cut(s) 51, 54, 212, 215, 229, 232, 285, 420
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 2 cut(s) 131, 359
Bme18I GGWCC 2 cut(s) 263, 468
BmgT120I GGNCC 2 cut(s) 263, 468
BmiI GGNNCC 3 cut(s) 135, 469, 750
BmrFI CCNGG 2 cut(s) 131, 359
BmsI GCATC 1 cut(s) 319
BmtI GCTAGC 1 cut(s) 758
BoxI GACNNNNGTC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 129, 205, 366
BsaWI WCCGGW 1 cut(s) 496
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 384
Bse118I RCCGGY 2 cut(s) 55, 84
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 131, 359
BseDI CCNNGG 3 cut(s) 129, 205, 366
BseGI GGATG 4 cut(s) 39, 242, 354, 469
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 206, 384
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 5 cut(s) 59, 399, 470, 718, 734
BseRI GAGGAG 4 cut(s) 85, 208, 211, 559
BseXI GCAGC 5 cut(s) 61, 200, 217, 270, 430
BshFI GGCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 4 cut(s) 56, 85, 461, 497
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 206, 384
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 705
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 5 cut(s) 53, 211, 227, 266, 752
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 5 cut(s) 60, 400, 469, 717, 733
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 135, 469, 750
BspOI GCTAGC 1 cut(s) 758
BspPI GGATC 5 cut(s) 72, 406, 490, 541, 693
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 2 cut(s) 55, 84
BssAI RCCGGY 2 cut(s) 55, 84
BssECI CCNNGG 3 cut(s) 129, 205, 366
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 2 cut(s) 131, 359
Bst4CI ACNGT 4 cut(s) 99, 277, 472, 643
BstC8I GCNNGC 4 cut(s) 57, 235, 348, 756
BstDEI CTNAG 7 cut(s) 68, 379, 408, 432, 456, 704, 720
BstDSI CCRYGG 2 cut(s) 205, 366
BstENI CCTNNNNNAGG 1 cut(s) 382
BstF5I GGATG 4 cut(s) 39, 242, 354, 469
BstMWI GCNNNNNNNGC 2 cut(s) 335, 755
BstNI CCWGG 2 cut(s) 131, 359
BstPAI GACNNNNGTC 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 129, 357
BstSFI CTRYAG 1 cut(s) 660
BstV1I GCAGC 5 cut(s) 61, 200, 217, 270, 430
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 4 cut(s) 64, 411, 482, 685
BstYI RGATCY 4 cut(s) 64, 411, 482, 685
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 2 cut(s) 205, 366
BtsCI GGATG 4 cut(s) 39, 242, 354, 469
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 324, 631, 728
Cac8I GCNNGC 4 cut(s) 57, 235, 348, 756
CciI TCATGA 1 cut(s) 12
Cfr10I RCCGGY 2 cut(s) 55, 84
Cfr13I GGNCC 2 cut(s) 263, 468
CseI GACGC 1 cut(s) 275
Csp6I GTAC 4 cut(s) 488, 597, 665, 738
CviAII CATG 4 cut(s) 13, 206, 303, 403
CviQI GTAC 4 cut(s) 488, 597, 665, 738
DdeI CTNAG 7 cut(s) 68, 379, 408, 432, 456, 704, 720
EaeI YGGCCR 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 263, 468
Eco57I CTGAAG 2 cut(s) 240, 549
EcoNI CCTNNNNNAGG 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 129, 357
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 4 cut(s) 16, 209, 306, 406
FaiI YATR 9 cut(s) 14, 207, 304, 404, 638, 669, 683, 732, 746
FaqI GGGAC 1 cut(s) 481
FatI CATG 4 cut(s) 12, 205, 302, 402
FbaI TGATCA 2 cut(s) 9, 22
Fnu4HI GCNGC 8 cut(s) 50, 53, 211, 214, 228, 231, 284, 419
FokI GGATG 4 cut(s) 46, 229, 341, 476
Fsp4HI GCNGC 8 cut(s) 50, 53, 211, 214, 228, 231, 284, 419
FspBI CTAG 3 cut(s) 384, 755, 760
GluI GCNGC 8 cut(s) 50, 53, 211, 214, 228, 231, 284, 419
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 210
HapII CCGG 4 cut(s) 56, 85, 461, 497
HgaI GACGC 1 cut(s) 275
Hin1II CATG 4 cut(s) 16, 209, 306, 406
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HinfI GANTC 4 cut(s) 4, 362, 502, 716
HpaII CCGG 4 cut(s) 56, 85, 461, 497
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 8 cut(s) 9, 69, 142, 149, 156, 163, 195, 482
Hpy188III TCNNGA 3 cut(s) 13, 314, 527
Hpy8I GTNNAC 1 cut(s) 710
HpyAV CCTTC 4 cut(s) 248, 279, 505, 524
HpyCH4III ACNGT 4 cut(s) 99, 277, 472, 643
HpyCH4V TGCA 2 cut(s) 310, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 755
HpyF3I CTNAG 7 cut(s) 68, 379, 408, 432, 456, 704, 720
Hsp92II CATG 4 cut(s) 16, 209, 306, 406
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Ksp22I TGATCA 2 cut(s) 9, 22
LmnI GCTCC 5 cut(s) 133, 221, 426, 572, 754
Lsp1109I GCAGC 5 cut(s) 61, 200, 217, 270, 430
LweI GCATC 1 cut(s) 319
MaeI CTAG 3 cut(s) 384, 755, 760
MboII GAAGA 3 cut(s) 49, 243, 246
MflI RGATCY 4 cut(s) 64, 411, 482, 685
MhlI GDGCHC 1 cut(s) 705
MlyI GAGTC 2 cut(s) 356, 710
MmeI TCCRAC 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 3 cut(s) 305, 315, 672
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 4 cut(s) 56, 85, 461, 497
MspR9I CCNGG 2 cut(s) 131, 359
MvaI CCWGG 2 cut(s) 131, 359
MwoI GCNNNNNNNGC 2 cut(s) 335, 755
NaeI GCCGGC 1 cut(s) 57
NcoI CCATGG 1 cut(s) 205
NgoMIV GCCGGC 1 cut(s) 55
NheI GCTAGC 1 cut(s) 754
NlaIII CATG 4 cut(s) 16, 209, 306, 406
NlaIV GGNNCC 3 cut(s) 135, 469, 750
OliI CACNNNNGTG 1 cut(s) 305
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 542
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 4, 502
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 8 cut(s) 51, 54, 212, 215, 229, 232, 285, 420
PleI GAGTC 2 cut(s) 356, 710
PpsI GAGTC 2 cut(s) 356, 710
PshAI GACNNNNGTC 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 129, 357
PspGI CCWGG 2 cut(s) 129, 357
PspN4I GGNNCC 3 cut(s) 135, 469, 750
PspPI GGNCC 2 cut(s) 263, 468
PsuI RGATCY 4 cut(s) 64, 411, 482, 685
RsaI GTAC 4 cut(s) 489, 598, 666, 739
RsaNI GTAC 4 cut(s) 488, 597, 665, 738
RseI CAYNNNNRTG 3 cut(s) 305, 315, 672
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 8 cut(s) 50, 53, 211, 214, 228, 231, 284, 419
Sau96I GGNCC 2 cut(s) 263, 468
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 2 cut(s) 356, 710
ScrFI CCNGG 2 cut(s) 131, 359
SduI GDGCHC 1 cut(s) 705
SetI ASST 9 cut(s) 380, 385, 389, 423, 442, 452, 521, 569, 637
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 2 cut(s) 263, 468
SmiMI CAYNNNNRTG 3 cut(s) 305, 315, 672
SsiI CCGC 5 cut(s) 53, 211, 227, 266, 752
SspMI CTAG 3 cut(s) 384, 755, 760
StyD4I CCNGG 2 cut(s) 129, 357
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 4 cut(s) 99, 277, 472, 643
TaqI TCGA 2 cut(s) 94, 313
TatI WGTACW 2 cut(s) 664, 737
TauI GCSGC 3 cut(s) 55, 213, 230
TfiI GAWTC 2 cut(s) 4, 502
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 3 cut(s) 331, 631, 728
TseI GCWGC 5 cut(s) 49, 213, 230, 283, 418
TspDTI ATGAA 3 cut(s) 29, 50, 333
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 3 cut(s) 331, 631, 728
VpaK11BI GGWCC 2 cut(s) 263, 468
XagI CCTNNNNNAGG 1 cut(s) 382
XspI CTAG 3 cut(s) 384, 755, 760
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.