Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Reverse (-)

92363 .. 97699

Gene Structure 5337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGGAAATTGAAGGGGGCAGGGGAGCCCTCGTCGCCACCTCGTGTTTCCAGTGAGCTATCGTACCTGGAATTTGAACTTCAAATTCACCATGATGAGACCAACACTCGCTTAGACGAGATGCAAGCTTCTCTCCAGGATTCACTCGCCATCTCTTTGGAGAGCTTCCGATCCATGCTCGTGGATGATTTTAAAGCGCAACTCACCGCTCTCAAGGAGCCTCCAATAGTCAACCAAGGTAGCACTGCGGTTCCACTACCCGATGGCACTGTTCATTTTGGTTCACTACCTTCTCCACCGGTGGTCTCAGCTATTGAGGATACCTCATCCACTATGGCCAGATTTGAGGTGTTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.97

Weight (kDa)

4.56

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	2 cut(s)	207, 248
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	71, 84
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	13, 77, 83
AjnI	CCWGG	2 cut(s)	66, 135
AluBI	AGCT	4 cut(s)	58, 128, 165, 311
AluI	AGCT	4 cut(s)	58, 128, 165, 311
Alw26I	GTCTC	2 cut(s)	92, 310
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	336
ApoI	RAATTY	2 cut(s)	71, 84
AsiGI	ACCGGT	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	80, 196
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	2 cut(s)	42, 179
BccI	CCATC	2 cut(s)	158, 257
BciT130I	CCWGG	2 cut(s)	68, 137
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	92, 310
BfuI	GTATCC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	68, 137
BmiI	GGNNCC	3 cut(s)	27, 219, 252
BmrFI	CCNGG	2 cut(s)	68, 137
BmsI	GCATC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	2 cut(s)	92, 310
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	68, 137
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	190, 326
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	92, 310
BsnI	GGCC	1 cut(s)	338
Bso31I	GGTCTC	2 cut(s)	92, 310
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	170
BspACI	CCGC	2 cut(s)	207, 248
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	27, 219, 252
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	2 cut(s)	92, 310
BsrBI	CCGCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	170
BssSI	CACGAG	2 cut(s)	42, 179
BssT1I	CCWWGG	1 cut(s)	235
Bst2BI	CACGAG	2 cut(s)	42, 179
Bst2UI	CCWGG	2 cut(s)	68, 137
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	112, 307
BstF5I	GGATG	2 cut(s)	190, 326
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	173
BstMAI	GTCTC	2 cut(s)	92, 310
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	68, 137
BstSCI	CCNGG	2 cut(s)	66, 135
BstXI	CCANNNNNNTGG	2 cut(s)	157, 181
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	190, 326
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	58, 243, 267
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	64
CspAI	ACCGGT	1 cut(s)	298
CviAII	CATG	2 cut(s)	92, 175
CviJI	RGCY	7 cut(s)	28, 58, 128, 165, 220, 311, 338
CviKI_1	RGCY	7 cut(s)	28, 58, 128, 165, 220, 311, 338
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	112, 307
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
DraI	TTTAAA	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	92, 310
EcoRII	CCWGG	2 cut(s)	66, 135
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	95, 178
FaiI	YATR	3 cut(s)	93, 176, 335
FatI	CATG	2 cut(s)	91, 174
FokI	GGATG	2 cut(s)	197, 313
FriOI	GRGCYC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	95, 178
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	2 cut(s)	80, 196
Hpy166II	GTNNAC	2 cut(s)	232, 284
Hpy188I	TCNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	232, 284
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	7, 300
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	112, 307
Hsp92II	CATG	2 cut(s)	95, 178
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	25, 217
LpnPI	CCDG	8 cut(s)	6, 53, 64, 80, 122, 149, 312, 352
LweI	GCATC	1 cut(s)	111
MalI	GATC	1 cut(s)	172
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	8, 71, 84
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	6 cut(s)	40, 51, 231, 310, 334, 340
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	192, 358
MslI	CAYNNNNRTG	2 cut(s)	93, 179
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	68, 137
MvaI	CCWGG	2 cut(s)	68, 137
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	95, 178
NlaIV	GGNNCC	3 cut(s)	27, 219, 252
PfeI	GAWTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	135
PinAI	ACCGGT	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	66, 135
PspGI	CCWGG	2 cut(s)	66, 135
PspN4I	GGNNCC	3 cut(s)	27, 219, 252
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	93, 179
SaqAI	TTAA	2 cut(s)	192, 358
Sau3AI	GATC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	68, 137
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	111
SgrAI	CRCCGGYG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	93, 179
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	8, 71, 84
SsiI	CCGC	2 cut(s)	207, 248
StyD4I	CCNGG	2 cut(s)	66, 135
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	3 cut(s)	8, 71, 84
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	192, 358
Tru9I	TTAA	2 cut(s)	192, 358
TscAI	CASTG	3 cut(s)	58, 250, 274
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	3 cut(s)	58, 250, 274
XapI	RAATTY	2 cut(s)	71, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.