FvH4_4g08763

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006394
Physical Location & Seq
Forward (+)
9408610 .. 9416624
8015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08763.t1

Sequence Viewer

Length: 333 bp
ATGGCGGGGAAAGCAGCGAAGAAGGCTGGAAAGTCGTCTTTCTCAGATCCTTTGAATCCGAGTGAGTTGTCTCAACTGGAGCTTGAAATCCAAGCTCATAAGGATGCTACTGCAGCTCAGTTTGAGGAAATGCAAGCGTCATTTCAGAAATCTCTGGATGCTAATTTGTTAAGCTTTCAGAGCATATTGGCGGAGCAGTTTCAGAAACACGTCTCATGCGTCAAACCCCTTGGTCTCAAACTTGGAAAAATCCCTTCTCGAATGGATCCGCATCCATTCAACACCTTTTTCTCCTACCCCAAATTTTCATCACTAACATACATATTGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.24

Weight (kDa)

9.1

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 191, 269
AclWI GGATC 3 cut(s) 41, 260, 273
AcsI RAATTY 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 3 cut(s) 55, 86, 280
AjiI CACGTC 1 cut(s) 211
AluBI AGCT 4 cut(s) 82, 95, 116, 174
AluI AGCT 4 cut(s) 82, 95, 116, 174
Alw26I GTCTC 3 cut(s) 75, 217, 239
AlwI GGATC 3 cut(s) 41, 260, 273
ApeKI GCWGC 2 cut(s) 14, 113
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 1 cut(s) 330
BamHI GGATCC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 26, 125
BcoDI GTCTC 3 cut(s) 75, 217, 239
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 2 cut(s) 15, 114
BlsI GCNGC 2 cut(s) 16, 115
BmgBI CACGTC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 267
BmsI GCATC 3 cut(s) 94, 148, 280
BpmI CTGGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 3 cut(s) 109, 163, 271
BseJI GATNNNNATC 1 cut(s) 270
BseMII CTCAG 2 cut(s) 57, 131
BseNI ACTGG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 26, 125
BsmAI GTCTC 3 cut(s) 75, 217, 239
BsmBI CGTCTC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 46, 265
BspACI CCGC 3 cut(s) 5, 191, 269
BspCNI CTCAG 2 cut(s) 56, 130
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 3 cut(s) 41, 260, 273
BspTNI GGTCTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 46, 265
BssT1I CCWWGG 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 43, 117
BstF5I GGATG 3 cut(s) 109, 163, 271
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 2 cut(s) 49, 268
BstMAI GTCTC 3 cut(s) 75, 217, 239
BstMBI GATC 2 cut(s) 46, 265
BstMWI GCNNNNNNNGC 4 cut(s) 11, 23, 113, 180
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 26, 125
BstX2I RGATCY 2 cut(s) 46, 265
BstYI RGATCY 2 cut(s) 46, 265
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 109, 163, 271
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 330
CseI GACGC 2 cut(s) 126, 208
CviAII CATG 1 cut(s) 216
CviJI RGCY 5 cut(s) 26, 82, 95, 116, 174
CviKI_1 RGCY 5 cut(s) 26, 82, 95, 116, 174
DdeI CTNAG 2 cut(s) 43, 117
DpnI GATC 2 cut(s) 48, 267
DpnII GATC 2 cut(s) 46, 265
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 219
FaiI YATR 5 cut(s) 99, 185, 217, 319, 323
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 15, 114
FokI GGATG 3 cut(s) 116, 170, 258
Fsp4HI GCNGC 2 cut(s) 15, 114
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 15, 114
GsuI CTGGAG 1 cut(s) 98
HgaI GACGC 2 cut(s) 126, 208
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 55
Hpy188I TCNGA 5 cut(s) 46, 60, 147, 180, 204
Hpy188III TCNNGA 2 cut(s) 155, 258
HpyAV CCTTC 2 cut(s) 16, 264
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 113, 133
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 23, 113, 180
HpyF3I CTNAG 2 cut(s) 43, 117
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 46, 265
LmnI GCTCC 2 cut(s) 79, 193
LpnPI CCDG 3 cut(s) 12, 62, 140
Lsp1109I GCAGC 2 cut(s) 26, 125
LweI GCATC 3 cut(s) 94, 148, 280
MaeII ACGT 1 cut(s) 210
MalI GATC 2 cut(s) 48, 267
MboI GATC 2 cut(s) 46, 265
MboII GAAGA 1 cut(s) 31
MflI RGATCY 2 cut(s) 46, 265
MluCI AATT 2 cut(s) 163, 302
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 11, 23, 113, 180
NdeII GATC 2 cut(s) 46, 265
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 16, 115
PspN4I GGNNCC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 115
PsuI RGATCY 2 cut(s) 46, 265
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 15, 114
Sau3AI GATC 2 cut(s) 46, 265
SetI ASST 6 cut(s) 84, 97, 118, 176, 213, 287
SfaNI GCATC 3 cut(s) 94, 148, 280
SfcI CTRYAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 2 cut(s) 163, 302
SsiI CCGC 3 cut(s) 5, 191, 269
StyI CCWWGG 1 cut(s) 229
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 259
TasI AATT 2 cut(s) 163, 302
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TseI GCWGC 2 cut(s) 14, 113
TspDTI ATGAA 1 cut(s) 297
XapI RAATTY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.