Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003593.1

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Reverse (-)

13009 .. 13992

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003593.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgggcaaactcaagggggcggggaagccgccgtcgccaccacacgtttccggcgaactttctcacatcgagtttgagcttcaaattcacagggacgaaaccaacgctcgcttggaggagatgcagtccaatttgcaaaattccatagccagttctttagcgggttttagatcggtgcttttggaggagatcaaacagctcactgagcttcgacaaggctcactcacgccatcaccactacctgatggcaccgcagtgctacaaccggatggatctgtgaaattcggctctctacctccacctcccgtacaaccaaagatgggagctctatccgagtcatcatcatcatcggtgttggccagatccgaaggtatccctcctaaccccattaagccgctcacagatgctgatatactgttgggatttattaaccctgtggtttcaagtcctgtgactactatgcctgatttgagtgtcttaaacaataatctgggcaccaaagagaaaggggatactgatggtggtacctctaaaatggttactagttgtgttagtaatacggctatgactatggttgaacgtgctgtgagtgaagcacaaacaaacccattgcaatatgctgggtttggccctcctactaatactagcactagattgttcaatggtcagatccactcgcacttacaccagtcccaagcctcttatcagatgcaaatggatcctaatcctttcacgatgacttactcgggtccttatgaggctacggtgcttaattttccaccgcctttgatccactcatcatcaccacatacaacacatgcttatggtttttccaagacatttccacagggccataacacatttccaacctttgctactactaccaccactcacatacccccatattcgtatcagcctacacctccacaacatcagccccccctgttggcaacaatatcagatgcaacaccatggtactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

327

Amino Acids

35.21

Weight (kDa)

5.92

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	524
AccB1I	GGYRCC	3 cut(s)	248, 494, 524
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	6 cut(s)	20, 29, 161, 252, 395, 782
AclWI	GGATC	6 cut(s)	280, 357, 664, 713, 726, 784
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	3 cut(s)	84, 139, 281
AfaI	GTAC	3 cut(s)	309, 526, 977
AfiI	CCNNNNNNNGG	2 cut(s)	320, 946
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	83, 444, 578, 661
AhlI	ACTAGT	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	79, 199, 208, 326
AluI	AGCT	4 cut(s)	79, 199, 208, 326
Alw21I	GWGCWC	1 cut(s)	328
AlwI	GGATC	6 cut(s)	280, 357, 664, 713, 726, 784
AlwNI	CAGNNNCTG	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	3 cut(s)	357, 628, 850
ApoI	RAATTY	3 cut(s)	84, 139, 281
Asp718I	GGTACC	1 cut(s)	524
AspS9I	GGNCC	3 cut(s)	629, 749, 850
AsuHPI	GGTGA	2 cut(s)	225, 795
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	749
BaeGI	GKGCMC	1 cut(s)	497
BalI	TGGCCA	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	3 cut(s)	248, 494, 524
BanII	GRGCYC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	328
BccI	CCATC	5 cut(s)	238, 239, 263, 313, 512
BceAI	ACGGC	2 cut(s)	16, 576
BciVI	GTATCC	2 cut(s)	383, 505
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	3 cut(s)	543, 645, 651
BfuI	GTATCC	2 cut(s)	383, 505
BisI	GCNGC	2 cut(s)	29, 395
BlsI	GCNGC	2 cut(s)	30, 396
Bme18I	GGWCC	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	3 cut(s)	629, 749, 850
BmiI	GGNNCC	5 cut(s)	250, 496, 526, 720, 750
BmsI	GCATC	4 cut(s)	111, 394, 699, 952
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	971
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 946
Bse1I	ACTGG	2 cut(s)	150, 688
Bse3DI	GCAATG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	723
BseDI	CCNNGG	1 cut(s)	971
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	2 cut(s)	320, 946
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	150, 688
BseRI	GAGGAG	2 cut(s)	131, 200
BseSI	GKGCMC	1 cut(s)	497
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	3 cut(s)	359, 630, 852
BshNI	GGYRCC	3 cut(s)	248, 494, 524
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	2 cut(s)	51, 266
BslFI	GGGAC	2 cut(s)	107, 676
BslI	CCNNNNNNNGG	2 cut(s)	320, 946
BsmFI	GGGAC	2 cut(s)	107, 676
BsnI	GGCC	3 cut(s)	359, 630, 852
BsoBI	CYCGRG	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	328, 497
Bsp143I	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	6 cut(s)	20, 29, 161, 252, 395, 782
BspANI	GGCC	3 cut(s)	359, 630, 852
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	5 cut(s)	250, 496, 526, 720, 750
BspPI	GGATC	6 cut(s)	280, 357, 664, 713, 726, 784
BspT107I	GGYRCC	3 cut(s)	248, 494, 524
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	2 cut(s)	150, 688
BssECI	CCNNGG	1 cut(s)	971
BssMI	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
BssT1I	CCWWGG	1 cut(s)	971
Bst4CI	ACNGT	2 cut(s)	417, 766
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	7 cut(s)	173, 192, 275, 365, 672, 721, 792
BstMBI	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 205
BstNSI	RCATGY	1 cut(s)	821
BstSLI	GKGCMC	1 cut(s)	497
BstX2I	RGATCY	4 cut(s)	272, 362, 669, 718
BstYI	RGATCY	4 cut(s)	272, 362, 669, 718
BsuI	GTATCC	2 cut(s)	383, 505
BsuRI	GGCC	3 cut(s)	359, 630, 852
BtgI	CCRYGG	1 cut(s)	971
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	201, 261
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	629, 749, 850
Csp6I	GTAC	3 cut(s)	308, 525, 976
CspCI	CAANNNNNGTGG	2 cut(s)	768, 803
CviAII	CATG	2 cut(s)	818, 972
CviQI	GTAC	3 cut(s)	308, 525, 976
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	7 cut(s)	172, 191, 274, 364, 671, 720, 791
DpnII	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
EaeI	YGGCCR	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	971
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	971
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	2 cut(s)	821, 975
FaqI	GGGAC	2 cut(s)	107, 676
FatI	CATG	2 cut(s)	817, 971
FauI	CCCGC	2 cut(s)	13, 154
Fnu4HI	GCNGC	2 cut(s)	29, 395
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	2 cut(s)	29, 395
FspBI	CTAG	3 cut(s)	543, 645, 651
GluI	GCNGC	2 cut(s)	29, 395
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	359, 630, 852
HapII	CCGG	2 cut(s)	51, 266
Hin1II	CATG	2 cut(s)	821, 975
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	2 cut(s)	51, 266
HphI	GGTGA	2 cut(s)	225, 795
Hpy188I	TCNGA	5 cut(s)	334, 367, 669, 708, 961
Hpy188III	TCNNGA	1 cut(s)	733
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	417, 766
HpyCH4IV	ACGT	2 cut(s)	45, 580
HpyCH4V	TGCA	5 cut(s)	124, 136, 613, 712, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 205
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	45, 580
Hsp92II	CATG	2 cut(s)	821, 975
KpnI	GGTACC	1 cut(s)	528
Kzo9I	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
LmnI	GCTCC	1 cut(s)	323
LweI	GCATC	4 cut(s)	111, 394, 699, 952
MaeI	CTAG	3 cut(s)	543, 645, 651
MaeII	ACGT	2 cut(s)	45, 580
MaeIII	GTNAC	2 cut(s)	451, 538
MalI	GATC	7 cut(s)	172, 191, 274, 364, 671, 720, 791
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
MflI	RGATCY	4 cut(s)	272, 362, 669, 718
MhlI	GDGCHC	2 cut(s)	328, 497
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	5 cut(s)	84, 130, 139, 281, 772
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	5 cut(s)	390, 429, 479, 771, 982
MslI	CAYNNNNRTG	2 cut(s)	254, 822
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	2 cut(s)	51, 266
MwoI	GCNNNNNNNGC	2 cut(s)	34, 205
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
NlaIII	CATG	2 cut(s)	821, 975
NlaIV	GGNNCC	5 cut(s)	250, 496, 526, 720, 750
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	821
OliI	CACNNNNGTG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	30, 396
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	620
PspN4I	GGNNCC	5 cut(s)	250, 496, 526, 720, 750
PspPI	GGNCC	3 cut(s)	629, 749, 850
PspPPI	RGGWCCY	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	4 cut(s)	272, 362, 669, 718
RsaI	GTAC	3 cut(s)	309, 526, 977
RsaNI	GTAC	3 cut(s)	308, 525, 976
RseI	CAYNNNNRTG	2 cut(s)	254, 822
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	5 cut(s)	390, 429, 479, 771, 982
SatI	GCNGC	2 cut(s)	29, 395
Sau3AI	GATC	7 cut(s)	170, 189, 272, 362, 669, 718, 789
Sau96I	GGNCC	3 cut(s)	629, 749, 850
SchI	GAGTC	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	328, 497
SfaNI	GCATC	4 cut(s)	111, 394, 699, 952
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	2 cut(s)	254, 822
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	5 cut(s)	84, 130, 139, 281, 772
SsiI	CCGC	6 cut(s)	20, 29, 161, 252, 395, 782
SspMI	CTAG	3 cut(s)	543, 645, 651
SstI	GAGCTC	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	2 cut(s)	417, 766
TaiI	ACGT	2 cut(s)	48, 583
TaqI	TCGA	2 cut(s)	69, 211
TasI	AATT	5 cut(s)	84, 130, 139, 281, 772
TauI	GCSGC	2 cut(s)	31, 397
Tru1I	TTAA	5 cut(s)	390, 429, 479, 771, 982
Tru9I	TTAA	5 cut(s)	390, 429, 479, 771, 982
TscAI	CASTG	2 cut(s)	208, 261
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspRI	CASTG	2 cut(s)	208, 261
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	3 cut(s)	84, 139, 281
XceI	RCATGY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	3 cut(s)	543, 645, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.