Rh6BG224300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006394
Physical Location & Seq
Forward (+)
42391991 .. 42393004
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG224300.1

Sequence Viewer

Length: 342 bp
ATGGCTGCTTCCTTCGCTAGTTTCAAAACCCTCTTATTGGATGATTTCAAGCAGCAGCTCACCTCCTTCATCAAAGAGACCGGCGGTACGCCTCAACCACAGGCCACTAAGCACGGCGATCGACGTCGACGTAGCCATCACCCATCTGCGTGTTTGCTCTGTGACGAGAGGAAGAGAACGAGAGAGGAAACCAGATCTGGATCTGGCTTTTATCGTTTTTCTTTCTTTTCTTTTTTTCCCCCTCATACTCGAATCTTATTGCCTAAAACAAGCGACGGCTTGTTAGCTCTGTCGCAATTGACACAAGTACATGCGACGGCATGTATATGCAGTCGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.79

Weight (kDa)

9.95

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 127
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 88, 309
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 25, 49
AluBI AGCT 2 cut(s) 58, 287
AluI AGCT 2 cut(s) 58, 287
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 208
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 5, 52, 55
AsuHPI GGTGA 2 cut(s) 52, 131
BbvI GCAGC 2 cut(s) 64, 67
BccI CCATC 2 cut(s) 144, 151
BceAI ACGGC 3 cut(s) 130, 292, 333
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 194
BisI GCNGC 3 cut(s) 6, 53, 56
BlsI GCNGC 3 cut(s) 7, 54, 57
BsaBI GATNNNNATC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 199
BseGI GGATG 1 cut(s) 46
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 64, 67
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 118, 194, 200
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 3 cut(s) 118, 194, 200
BssNI GRCGYC 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 3 cut(s) 121, 197, 203
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 118, 194, 200
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 2 cut(s) 314, 324
BstV1I GCAGC 2 cut(s) 64, 67
BstX2I RGATCY 2 cut(s) 194, 200
BstYI RGATCY 2 cut(s) 194, 200
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 2 cut(s) 87, 308
CviAII CATG 2 cut(s) 311, 321
CviJI RGCY 7 cut(s) 5, 58, 104, 135, 207, 279, 287
CviKI_1 RGCY 7 cut(s) 5, 58, 104, 135, 207, 279, 287
CviQI GTAC 2 cut(s) 87, 308
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 120, 196, 202
DpnII GATC 3 cut(s) 118, 194, 200
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 71
FaeI CATG 2 cut(s) 314, 324
FaiI YATR 5 cut(s) 246, 312, 322, 326, 328
FatI CATG 2 cut(s) 310, 320
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 6, 53, 56
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 6, 53, 56
FspBI CTAG 1 cut(s) 18
GluI GCNGC 3 cut(s) 6, 53, 56
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 314, 324
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 1 cut(s) 252
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 52, 131
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 5 cut(s) 126, 129, 132, 278, 319
HpyAV CCTTC 2 cut(s) 22, 76
HpyCH4IV ACGT 2 cut(s) 124, 130
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 124, 130
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 314, 324
Kzo9I GATC 3 cut(s) 118, 194, 200
LpnPI CCDG 5 cut(s) 86, 94, 183, 189, 205
Lsp1109I GCAGC 2 cut(s) 64, 67
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 124, 130
MaeIII GTNAC 1 cut(s) 161
MalI GATC 3 cut(s) 120, 196, 202
MboI GATC 3 cut(s) 118, 194, 200
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 2 cut(s) 296, 337
MflI RGATCY 2 cut(s) 194, 200
MluCI AATT 2 cut(s) 296, 337
MnlI CCTC 6 cut(s) 41, 73, 102, 162, 178, 252
MslI CAYNNNNRTG 2 cut(s) 148, 325
MspI CCGG 1 cut(s) 81
MunI CAATTG 2 cut(s) 296, 337
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 118, 194, 200
NlaIII CATG 2 cut(s) 314, 324
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 2 cut(s) 314, 324
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 3 cut(s) 7, 54, 57
Ple19I CGATCG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 194, 200
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 2 cut(s) 88, 309
RsaNI GTAC 2 cut(s) 87, 308
RseI CAYNNNNRTG 2 cut(s) 148, 325
SalI GTCGAC 1 cut(s) 126
SatI GCNGC 3 cut(s) 6, 53, 56
Sau3AI GATC 3 cut(s) 118, 194, 200
SetI ASST 5 cut(s) 60, 65, 127, 133, 289
SgrDI CGTCGACG 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 148, 325
Sse9I AATT 2 cut(s) 296, 337
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 18
TaiI ACGT 2 cut(s) 127, 133
TaqI TCGA 3 cut(s) 121, 127, 250
TasI AATT 2 cut(s) 296, 337
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 1 cut(s) 252
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 3 cut(s) 5, 52, 55
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 58
XceI RCATGY 2 cut(s) 314, 324
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 1 cut(s) 18
ZraI GACGTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.