Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

33878244 .. 33878642

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTCGCTTCCTTCGCTAGTTTCAAAACCCTCTTATTGGATGATTTCAAGCAAGAACTCACCTCTTTCATCAAAGAGACCGGCGGTATGCCTCAACCACAGGCCACTAAGCACGGCGACGTAGCCATCACCCAACCGGACGGATCGGTCCGCTTTGGCTCTTTACTATCTCCGGTGCTCCAACGGCGATTGGTGAGCTTCACGGAATCCTCTTCATCTATCGTGGCCGGATCCGAGGGTAACAATTCTCGGATTCAAGATGCTTGTGCTTTTGGTGTTGTTCATGATGAGTTATTATGTAAAGTTAATGCTATCGCAGATATGACTACCGTGGATACATTCATGGTGGATGGTTCCGTTAGTCGAACCAAGAATGCTTTCCATCCTCTAGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.21

Weight (kDa)

5.22

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AciI	CCGC	2 cut(s)	84, 151
AclWI	GGATC	3 cut(s)	151, 225, 238
AcoI	YGGCCR	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	25, 49, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	2 cut(s)	198, 394
AluI	AGCT	2 cut(s)	198, 394
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	151, 225, 238
AoxI	GGCC	2 cut(s)	102, 225
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	52, 121, 205
AvaII	GGWCC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	3 cut(s)	134, 344, 390
BceAI	ACGGC	2 cut(s)	130, 200
BciVI	GTATCC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	18, 389
BfuI	GTATCC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	232, 355
BmsI	GCATC	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	234, 330
BsaWI	WCCGGW	2 cut(s)	136, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	234, 330
BseGI	GGATG	3 cut(s)	46, 355, 382
BseLI	CCNNNNNNNGG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	104, 227
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	4 cut(s)	81, 137, 173, 228
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	104, 227
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	143, 230
BspACI	CCGC	2 cut(s)	84, 151
BspANI	GGCC	2 cut(s)	104, 227
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	232, 355
BspPI	GGATC	3 cut(s)	151, 225, 238
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	234, 330
BssMI	GATC	2 cut(s)	143, 230
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	46, 355, 382
BstKTI	GATC	2 cut(s)	146, 233
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	143, 230
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 184
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	104, 227
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	46, 355, 382
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	148
CpoI	CGGWCCG	1 cut(s)	148
CspI	CGGWCCG	1 cut(s)	148
CviAII	CATG	2 cut(s)	284, 343
CviJI	RGCY	6 cut(s)	104, 125, 159, 198, 227, 394
CviKI_1	RGCY	6 cut(s)	104, 125, 159, 198, 227, 394
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	145, 232
DpnII	GATC	2 cut(s)	143, 230
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	148
FaeI	CATG	2 cut(s)	287, 346
FaiI	YATR	5 cut(s)	89, 285, 298, 323, 344
FatI	CATG	2 cut(s)	283, 342
FokI	GGATG	3 cut(s)	53, 362, 369
FspBI	CTAG	2 cut(s)	18, 389
HaeIII	GGCC	2 cut(s)	104, 227
HapII	CCGG	4 cut(s)	81, 137, 173, 228
Hin1II	CATG	2 cut(s)	287, 346
HinfI	GANTC	2 cut(s)	206, 253
HpaII	CCGG	4 cut(s)	81, 137, 173, 228
HphI	GGTGA	3 cut(s)	52, 121, 205
Hpy188I	TCNGA	2 cut(s)	235, 252
Hpy188III	TCNNGA	3 cut(s)	257, 284, 389
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 184
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	287, 346
Kzo9I	GATC	2 cut(s)	143, 230
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	5 cut(s)	86, 94, 150, 186, 241
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	18, 389
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	145, 232
MboI	GATC	2 cut(s)	143, 230
MboII	GAAGA	1 cut(s)	204
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	41, 73, 102, 220, 229, 396
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	306, 397
MspI	CCGG	4 cut(s)	81, 137, 173, 228
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	14, 184
NdeII	GATC	2 cut(s)	143, 230
NlaIII	CATG	2 cut(s)	287, 346
NlaIV	GGNNCC	2 cut(s)	232, 355
PagI	TCATGA	1 cut(s)	283
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	206, 253
PspN4I	GGNNCC	2 cut(s)	232, 355
PspPI	GGNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	230
Rsr2I	CGGWCCG	1 cut(s)	148
RsrII	CGGWCCG	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	306, 397
Sau3AI	GATC	2 cut(s)	143, 230
Sau96I	GGNCC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	65, 123, 200, 396
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	2 cut(s)	84, 151
SspMI	CTAG	2 cut(s)	18, 389
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	364
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	206, 253
Tru1I	TTAA	2 cut(s)	306, 397
Tru9I	TTAA	2 cut(s)	306, 397
TspDTI	ATGAA	4 cut(s)	58, 204, 272, 331
TspGWI	ACGGA	3 cut(s)	156, 218, 346
VpaK11BI	GGWCC	1 cut(s)	148
XbaI	TCTAGA	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	18, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.