Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Reverse (-)

9149134 .. 9149836

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGCGACATGTGTCCTCATCTATTAGCTGGTCCAGGTATAAAGCCTCATCTTGTATCCTGTAACCATTATGGATCAATATATCATAATTTCTCTTTTGCATTTTTTTCCTTCTGCATTTCTTTTCTTCGTTGGGGTCTTACCCTAACAACTGGTATCAAGAGCCAGACGACCATGGTTAAGCTTAAGGGGGTGGGGAAAACTGCGGATCCGCCTCGCAACCCGAAGGCCCCTCTTGTATCGGATGAGCTTTCTCACCTCGAATACGAGTTCCAGATCCACAGAGATGAGACCAGTGCCCGCTTGGAGGAGCTACAAGCTTCGATCCAGGACTCTCTAGCTACTTCCTTGGCTCAATTTAAGTTGGCGATGATGGAGGAGCTCACACATCAGCTCACGTCTTCTCTTACCACAGTTGTCAAAGATGGTTTGCACACTTCTCAGTCCTTAGTGGTGAGCCAGGGGAGCACCGCAGTTCCTCAACCTGATGGAACTGTTCAATTTGGATCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

6.21

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	206, 212, 301, 471
AclWI	GGATC	6 cut(s)	82, 203, 216, 271, 319, 514
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	500
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	3 cut(s)	34, 327, 459
AluBI	AGCT	8 cut(s)	29, 184, 250, 313, 320, 341, 382, 394
AluI	AGCT	8 cut(s)	29, 184, 250, 313, 320, 341, 382, 394
Alw21I	GWGCWC	2 cut(s)	384, 470
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	6 cut(s)	82, 203, 216, 271, 319, 514
AoxI	GGCC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	32, 229
AsuHPI	GGTGA	2 cut(s)	248, 466
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	384, 470
BccI	CCATC	3 cut(s)	367, 419, 482
BciT130I	CCWGG	3 cut(s)	36, 329, 461
BciVI	GTATCC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	338
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	36, 329, 461
Bme18I	GGWCC	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	32, 229
BmiI	GGNNCC	2 cut(s)	210, 231
BmrFI	CCNGG	3 cut(s)	36, 329, 461
BoxI	GACNNNNGTC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	174, 348, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	157, 294
BseBI	CCWGG	3 cut(s)	36, 329, 461
BseDI	CCNNGG	3 cut(s)	174, 348, 460
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	157, 294
BseRI	GAGGAG	2 cut(s)	323, 392
BseSI	GKGCMC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	2 cut(s)	384, 470
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	301, 384, 470
Bsp143I	GATC	5 cut(s)	74, 208, 276, 324, 506
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	4 cut(s)	206, 212, 301, 471
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	210, 231
BspPI	GGATC	6 cut(s)	82, 203, 216, 271, 319, 514
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	157, 294
BssECI	CCNNGG	3 cut(s)	174, 348, 460
BssMI	GATC	5 cut(s)	74, 208, 276, 324, 506
BssT1I	CCWWGG	2 cut(s)	174, 348
Bst2UI	CCWGG	3 cut(s)	36, 329, 461
Bst4CI	ACNGT	2 cut(s)	415, 496
BstAFI	CTTAAG	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	441, 448
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	5 cut(s)	77, 211, 279, 327, 509
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	5 cut(s)	74, 208, 276, 324, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	3 cut(s)	36, 329, 461
BstNSI	RCATGY	1 cut(s)	13
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSCI	CCNGG	3 cut(s)	34, 327, 459
BstSLI	GKGCMC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	3 cut(s)	208, 276, 506
BstYI	RGATCY	3 cut(s)	208, 276, 506
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	32, 229
CviAII	CATG	2 cut(s)	10, 175
DdeI	CTNAG	2 cut(s)	441, 448
DpnI	GATC	5 cut(s)	76, 210, 278, 326, 508
DpnII	GATC	5 cut(s)	74, 208, 276, 324, 506
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	174, 348
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	34, 327, 459
EcoT14I	CCWWGG	2 cut(s)	174, 348
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	174, 348
FaeI	CATG	2 cut(s)	13, 178
FaiI	YATR	6 cut(s)	11, 41, 72, 82, 87, 176
FatI	CATG	2 cut(s)	9, 174
FauI	CCCGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	13, 178
HindIII	AAGCTT	2 cut(s)	182, 318
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	2 cut(s)	248, 466
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	160, 274
HpyAV	CCTTC	2 cut(s)	121, 220
HpyCH4III	ACNGT	2 cut(s)	415, 496
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	101, 117, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	441, 448
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	13, 178
Kzo9I	GATC	5 cut(s)	74, 208, 276, 324, 506
LmnI	GCTCC	3 cut(s)	310, 379, 465
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	5 cut(s)	76, 210, 278, 326, 508
MboI	GATC	5 cut(s)	74, 208, 276, 324, 506
MboII	GAAGA	2 cut(s)	119, 393
MflI	RGATCY	3 cut(s)	208, 276, 506
MhlI	GDGCHC	3 cut(s)	301, 384, 470
MluCI	AATT	3 cut(s)	88, 356, 500
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	8 cut(s)	27, 57, 225, 243, 269, 301, 370, 489
MseI	TTAA	3 cut(s)	180, 186, 360
MslI	CAYNNNNRTG	1 cut(s)	285
MspCI	CTTAAG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	36, 329, 461
MvaI	CCWGG	3 cut(s)	36, 329, 461
MwoI	GCNNNNNNNGC	1 cut(s)	465
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	74, 208, 276, 324, 506
NlaIII	CATG	2 cut(s)	13, 178
NlaIV	GGNNCC	2 cut(s)	210, 231
NspI	RCATGY	1 cut(s)	13
PciI	ACATGT	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	327
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PscI	ACATGT	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	3 cut(s)	34, 327, 459
PspGI	CCWGG	3 cut(s)	34, 327, 459
PspN4I	GGNNCC	2 cut(s)	210, 231
PspPI	GGNCC	2 cut(s)	32, 229
PsuI	RGATCY	3 cut(s)	208, 276, 506
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	180, 186, 360
Sau3AI	GATC	5 cut(s)	74, 208, 276, 324, 506
Sau96I	GGNCC	2 cut(s)	32, 229
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	36, 329, 461
SduI	GDGCHC	3 cut(s)	301, 384, 470
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	88, 356, 500
SsiI	CCGC	4 cut(s)	206, 212, 301, 471
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	3 cut(s)	34, 327, 459
StyI	CCWWGG	2 cut(s)	174, 348
TaaI	ACNGT	2 cut(s)	415, 496
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	261, 323
TasI	AATT	3 cut(s)	88, 356, 500
Tru1I	TTAA	3 cut(s)	180, 186, 360
Tru9I	TTAA	3 cut(s)	180, 186, 360
TscAI	CASTG	1 cut(s)	301
TspRI	CASTG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	32
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.