Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

61526057 .. 61527378

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCCGCTGCTCCTCCTCCACCGCCGCCAGCCTTCCATCCTCATCTTCTCCGGCGGGACCGCCTTCAATGGCGTCGTCTAGGAGCTCAAGAATTTAACCATTCGCGTCGCTCACATGCTTCCTGTTTCCGACGACGGAGGAACTTCCTGTTTCCGACGACGGAGGAACTACCGCCTAGATTGTCCGTGTCCTCGACTCGTGGGGTGCGATTTGGGCAAGCAAATGCTAAGAAGGCTATTGGTTTCACTGAGGTGATATCAATTATCCCTTATAATGCTGTTCAGCTTTTTGCTTACGAAGCTTACAAGGCATCCCGTGATGCAAATCCCCATATGATCCTGAATGAGAATGAAGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006091 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009765 GO:0009941 GO:0009987 GO:0010117 GO:0010206 GO:0015075 GO:0015215 GO:0015216 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0015979 GO:0016020 GO:0016021 GO:0019538 GO:0019684 GO:0019866 GO:0022857 GO:0030091 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901564 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

11.05

Isoelectric Point (pI)

76.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AccII	CGCG	1 cut(s)	106
AciI	CCGC	6 cut(s)	6, 23, 26, 55, 61, 173
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	68
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	86, 286, 302
AluI	AGCT	3 cut(s)	86, 286, 302
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	80, 177
BisI	GCNGC	3 cut(s)	6, 9, 26
BlsI	GCNGC	3 cut(s)	7, 10, 27
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	59
BmsI	GCATC	2 cut(s)	310, 320
BpuEI	CTTGAG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	324
BseGI	GGATG	2 cut(s)	37, 311
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	6 cut(s)	6, 23, 26, 55, 61, 173
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	331
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	30, 219
BstDEI	CTNAG	2 cut(s)	228, 249
BstF5I	GGATG	2 cut(s)	37, 311
BstFNI	CGCG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 233, 299, 308
BstNSI	RCATGY	1 cut(s)	119
BstUI	CGCG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	37, 311
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	30, 219
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	2 cut(s)	62, 95
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	6 cut(s)	5, 32, 86, 236, 286, 302
CviKI_1	RGCY	6 cut(s)	5, 32, 86, 236, 286, 302
DdeI	CTNAG	2 cut(s)	228, 249
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	1 cut(s)	119
FaiI	YATR	4 cut(s)	117, 273, 333, 335
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	6, 9, 26
FokI	GGATG	2 cut(s)	24, 298
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	6, 9, 26
FspBI	CTAG	2 cut(s)	80, 177
GluI	GCNGC	3 cut(s)	6, 9, 26
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	2 cut(s)	62, 95
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	131, 156
Hpy188III	TCNNGA	2 cut(s)	89, 340
Hpy99I	CGWCG	6 cut(s)	78, 111, 135, 138, 160, 163
HpyAV	CCTTC	3 cut(s)	43, 74, 226
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 233, 299, 308
HpyF3I	CTNAG	2 cut(s)	228, 249
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	16, 83
LpnPI	CCDG	5 cut(s)	42, 65, 136, 161, 353
LweI	GCATC	2 cut(s)	310, 320
MaeI	CTAG	2 cut(s)	80, 177
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	92, 261
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	154, 179
MnlI	CCTC	7 cut(s)	24, 27, 51, 132, 157, 202, 244
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	214, 233, 299, 308
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	7, 10, 27
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	6, 9, 26
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	4 cut(s)	88, 255, 288, 304
SfaNI	GCATC	2 cut(s)	310, 320
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	92, 261
SsiI	CCGC	6 cut(s)	6, 23, 26, 55, 61, 173
SspMI	CTAG	2 cut(s)	80, 177
SstI	GAGCTC	1 cut(s)	88
TaqI	TCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	92, 261
TauI	GCSGC	2 cut(s)	8, 28
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	8
TspGWI	ACGGA	3 cut(s)	151, 175, 176
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	2 cut(s)	80, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.