Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

49174080 .. 49174532

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG293000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATGATATGAAGGCGCAGCTCACCGCGCTCAAGGAGCCTCCTGTGGTCAACCAAGGTAGTGCTGCGATACCACTACCTGATGGCACTGTTTGTTTTGGTTCACCGCCTCCTTCATCGGCGGTCGCAGCCATGGAGGATACATCATCCACTATGGCCAGATCTAAGGGTAATCCAACTCATACCTCAAGATCTGAGGGTAATCCCACTCATACCTCATCTTTTCCTGATTTTAACTTTACTACTGATGATGTGTTGTTACAATTAACTAGTACTGTGCGTACTAGTTCTATTGAGGTCACCACTGAGTTAAAAATTACGGGAAATGATGCTGAGAAAATGGAGTTCAAGGAGACAGGAATGATTGGAAATATGGGGGTTAAACCTATAGGTAGTGGTAGTACTATGGCCTTAGCAAGTAGTTCAGTAAATGGATCATTAAGTGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.52

Weight (kDa)

4.74

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	27, 107, 122
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	3 cut(s)	274, 283, 403
AgsI	TTSAA	1 cut(s)	349
AhlI	ACTAGT	2 cut(s)	269, 284
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	2 cut(s)	156, 408
ApeKI	GCWGC	3 cut(s)	19, 65, 128
AspLEI	GCGC	2 cut(s)	19, 31
AsuHPI	GGTGA	3 cut(s)	16, 96, 292
BalI	TGGCCA	1 cut(s)	158
BbvI	GCAGC	3 cut(s)	31, 52, 140
BccI	CCATC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	2 cut(s)	269, 284
BfaI	CTAG	2 cut(s)	270, 285
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	2 cut(s)	161, 191
BisI	GCNGC	3 cut(s)	20, 66, 129
BlsI	GCNGC	3 cut(s)	21, 67, 130
BmcAI	AGTACT	2 cut(s)	274, 403
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	412
BpuEI	CTTGAG	2 cut(s)	17, 172
BsaJI	CCNNGG	2 cut(s)	55, 132
BseDI	CCNNGG	2 cut(s)	55, 132
BseGI	GGATG	2 cut(s)	10, 146
BseMII	CTCAG	3 cut(s)	186, 297, 324
BseXI	GCAGC	3 cut(s)	31, 52, 140
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	158, 410
BsiEI	CGRYCG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	158, 410
Bsp143I	GATC	3 cut(s)	161, 191, 434
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	27, 107, 122
BspANI	GGCC	2 cut(s)	158, 410
BspCNI	CTCAG	3 cut(s)	187, 298, 325
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	55, 132
BssMI	GATC	3 cut(s)	161, 191, 434
BssT1I	CCWWGG	2 cut(s)	55, 132
Bst4CI	ACNGT	2 cut(s)	91, 277
BstDEI	CTNAG	5 cut(s)	165, 195, 306, 333, 412
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	10, 146
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	19, 31
BstKTI	GATC	3 cut(s)	164, 194, 437
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	161, 191, 434
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 37, 128
BstPI	GGTNACC	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	31, 52, 140
BstX2I	RGATCY	2 cut(s)	161, 191
BstYI	RGATCY	2 cut(s)	161, 191
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	158, 410
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	10, 146
BtsIMutI	CAGTG	2 cut(s)	87, 303
CfoI	GCGC	2 cut(s)	19, 31
Csp6I	GTAC	3 cut(s)	273, 282, 402
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	5 cut(s)	22, 40, 131, 158, 410
CviKI_1	RGCY	5 cut(s)	22, 40, 131, 158, 410
CviQI	GTAC	3 cut(s)	273, 282, 402
DdeI	CTNAG	5 cut(s)	165, 195, 306, 333, 412
DpnI	GATC	3 cut(s)	163, 193, 436
DpnII	GATC	3 cut(s)	161, 191, 434
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	55, 132
Eco91I	GGTNACC	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	55, 132
ErhI	CCWWGG	2 cut(s)	55, 132
FaeI	CATG	1 cut(s)	136
FaiI	YATR	8 cut(s)	11, 134, 155, 183, 213, 374, 389, 407
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	20, 66, 129
FokI	GGATG	2 cut(s)	17, 133
Fsp4HI	GCNGC	3 cut(s)	20, 66, 129
FspBI	CTAG	2 cut(s)	270, 285
GlaI	GCGC	2 cut(s)	18, 30
GluI	GCNGC	3 cut(s)	20, 66, 129
HaeIII	GGCC	2 cut(s)	158, 410
HhaI	GCGC	2 cut(s)	19, 31
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	2 cut(s)	17, 29
HinP1I	GCGC	2 cut(s)	17, 29
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HphI	GGTGA	3 cut(s)	16, 96, 292
Hpy166II	GTNNAC	2 cut(s)	52, 104
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	189, 227
Hpy8I	GTNNAC	2 cut(s)	52, 104
HpyAV	CCTTC	2 cut(s)	7, 123
HpyCH4III	ACNGT	2 cut(s)	91, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 37, 128
HpyF3I	CTNAG	5 cut(s)	165, 195, 306, 333, 412
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	2 cut(s)	17, 29
Kzo9I	GATC	3 cut(s)	161, 191, 434
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	57, 93, 172, 240, 342
Lsp1109I	GCAGC	3 cut(s)	31, 52, 140
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	270, 285
MaeIII	GTNAC	2 cut(s)	258, 298
MalI	GATC	3 cut(s)	163, 193, 436
MboI	GATC	3 cut(s)	161, 191, 434
MflI	RGATCY	2 cut(s)	161, 191
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	2 cut(s)	263, 315
MluNI	TGGCCA	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	51, 120, 130, 190, 196, 226, 289
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	5 cut(s)	234, 266, 311, 381, 440
Msp20I	TGGCCA	1 cut(s)	158
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	28, 37, 128
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	161, 191, 434
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	21, 67, 130
PspEI	GGTNACC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	161, 191
RsaI	GTAC	3 cut(s)	274, 283, 403
RsaNI	GTAC	3 cut(s)	273, 282, 402
SaqAI	TTAA	5 cut(s)	234, 266, 311, 381, 440
SatI	GCNGC	3 cut(s)	20, 66, 129
Sau3AI	GATC	3 cut(s)	161, 191, 434
ScaI	AGTACT	2 cut(s)	274, 403
SetI	ASST	8 cut(s)	24, 61, 82, 188, 218, 300, 388, 394
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	32, 187
SmoI	CTYRAG	2 cut(s)	32, 187
SpeI	ACTAGT	2 cut(s)	269, 284
Sse9I	AATT	2 cut(s)	263, 315
SsiI	CCGC	3 cut(s)	27, 107, 122
SspMI	CTAG	2 cut(s)	270, 285
StyI	CCWWGG	2 cut(s)	55, 132
TaaI	ACNGT	2 cut(s)	91, 277
TasI	AATT	2 cut(s)	263, 315
TatI	WGTACW	2 cut(s)	272, 401
Tru1I	TTAA	5 cut(s)	234, 266, 311, 381, 440
Tru9I	TTAA	5 cut(s)	234, 266, 311, 381, 440
TscAI	CASTG	2 cut(s)	94, 310
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	19, 65, 128
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	26, 105
TspRI	CASTG	2 cut(s)	94, 310
XspI	CTAG	2 cut(s)	270, 285
ZrmI	AGTACT	2 cut(s)	274, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.