Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

68034270 .. 68035334

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0498400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCTTTACGAGTGTGATGAGTGCCCCAATAAGTTTACTTTCCCTTTTTGTTGCTCAAGGCGCCTCGGAGCTCCGGGTTTCCAAGGGAATGGCCCTGAGGTGGCGTTGGAGTTGTTTAAGGAAATGGAGACGGAGAATATGAAGCCGAATGATGTGACCATGGTCTTGTCAACTTGCGCAAAGAAGGCGGATTTGGAGTTTGGGAGGTGGGTTTGTTTGAATGTTGAAAGGCATGGAGTTGAAGAGAACTTGACTTTGAATAATGCTATGCTGGATATGTATGTGAAATGCGGGAGTGTTGAAGATGCGGAGAGATTGTTTGGAAGGATGCCGGAGAAGGACGTTGTGTCGTGGACTACTATGCTTGATGGGTATGCTCGGATGGGGAAATATGATGAGGCTAGGCATGTTTTTGCTGCCATGCCTAGTCAGGATATTGCTGCGTGGAATGTGCTCATTTCGTCTTATGAACAGAATGGTAGGCCGAAAGAGGCTTTAGCTATCTTCCATGAGTTGCAGAAGAACAAGGGTCCCAAGCCTGATGAGGTTACTCTAGTTAGTACTCTGGCAGCGTGTGCTCAATTGGGAGCGATTGATCTTGGCGGCTGGATACATGTTTACGTAAAGAAGCAGGGAATGAAGTTGAATTGTCACCTCACAACCTCGCTTATCGACATGTATGCAAAATGCGGAAATCTAGAGAAGGCTCTTGAGGTTTTTAATTCAGTGGAGATAAGAGGCGTATTTGTCTGGAGCGCCATTATTGCTGCTTTGGCAATGCACGGTCAGGGGAGGGATGCATTGCACTTTTTCTCAAAAATGCTTGAGCCTAAGGTCACTACAACAAAACTGGTCTTTTACGACACACAATGTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.86

Weight (kDa)

5.71

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	113 - 145	2.2e-06	PPR repeat family
PPR	PF01535	116 - 144	9.7e-07	PPR repeat
PPR_2	PF13041	145 - 193	2e-08	PPR repeat family
PPR	PF01535	148 - 175	1.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	5 cut(s)	188, 291, 308, 603, 690
AcyI	GRCGYC	1 cut(s)	61
AdeI	CACNNNGTG	1 cut(s)	872
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	2 cut(s)	613, 675
AgsI	TTSAA	6 cut(s)	220, 227, 242, 259, 302, 646
AhdI	GACNNNNNGTC	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	2 cut(s)	71, 500
AluI	AGCT	2 cut(s)	71, 500
Alw21I	GWGCWC	3 cut(s)	73, 456, 580
Alw26I	GTCTC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	91, 482
ApeKI	GCWGC	4 cut(s)	416, 440, 569, 767
AspLEI	GCGC	3 cut(s)	63, 179, 758
AspS9I	GGNCC	2 cut(s)	92, 530
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	2 cut(s)	96, 831
BaeGI	GKGCMC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	3 cut(s)	73, 456, 580
BbvI	GCAGC	4 cut(s)	403, 427, 581, 754
BccI	CCATC	2 cut(s)	362, 376
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciVI	GTATCC	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	4 cut(s)	402, 426, 554, 698
BfoI	RGCGCY	2 cut(s)	64, 759
BfuI	GTATCC	1 cut(s)	603
BisI	GCNGC	5 cut(s)	417, 441, 570, 604, 768
BlsI	GCNGC	5 cut(s)	418, 442, 571, 605, 769
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	530
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	92, 530
BmiI	GGNNCC	3 cut(s)	62, 531, 532
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	295, 318, 787
BoxI	GACNNNNGTC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	772
BpuEI	CTTGAG	3 cut(s)	40, 731, 845
BpuMI	CCSGG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	622
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	64, 82, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	855
Bse21I	CCTNAGG	2 cut(s)	96, 831
Bse3DI	GCAATG	2 cut(s)	783, 800
BseDI	CCNNGG	3 cut(s)	64, 82, 159
BseGI	GGATG	3 cut(s)	333, 387, 802
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	2 cut(s)	783, 800
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	855
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	403, 427, 581, 754
BshFI	GGCC	2 cut(s)	93, 484
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	3 cut(s)	73, 456, 580
BsiSI	CCGG	2 cut(s)	74, 332
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	93, 484
Bsp1286I	GDGCHC	4 cut(s)	26, 73, 456, 580
Bsp143I	GATC	1 cut(s)	595
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	188, 291, 308, 603, 690
BspANI	GGCC	2 cut(s)	93, 484
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	62, 531, 532
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	783, 800
BsrI	ACTGG	1 cut(s)	855
BssECI	CCNNGG	3 cut(s)	64, 82, 159
BssMI	GATC	1 cut(s)	595
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	82, 159
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	622
BstDEI	CTNAG	2 cut(s)	96, 831
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	333, 387, 802
BstH2I	RGCGCY	2 cut(s)	64, 759
BstHHI	GCGC	3 cut(s)	63, 179, 758
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 185, 575, 764, 773
BstNSI	RCATGY	3 cut(s)	410, 617, 679
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	26
BstSNI	TACGTA	1 cut(s)	622
BstV1I	GCAGC	4 cut(s)	403, 427, 581, 754
BstXI	CCANNNNNNTGG	1 cut(s)	89
Bsu36I	CCTNAGG	2 cut(s)	96, 831
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	2 cut(s)	93, 484
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	333, 387, 802
BtsIMutI	CAGTG	1 cut(s)	732
CfoI	GCGC	3 cut(s)	63, 179, 758
Cfr13I	GGNCC	2 cut(s)	92, 530
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	7 cut(s)	160, 233, 407, 421, 509, 614, 676
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	96, 831
DinI	GGCGCC	1 cut(s)	62
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DraIII	CACNNNGTG	1 cut(s)	872
DriI	GACNNNNNGTC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	237
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	71
Eco105I	TACGTA	1 cut(s)	622
Eco130I	CCWWGG	2 cut(s)	82, 159
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	71
Eco81I	CCTNAGG	2 cut(s)	96, 831
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	82, 159
EcoT22I	ATGCAT	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	73
EgeI	GGCGCC	1 cut(s)	62
EheI	GGCGCC	1 cut(s)	62
ErhI	CCWWGG	2 cut(s)	82, 159
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	7 cut(s)	163, 236, 410, 424, 512, 617, 679
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	7 cut(s)	159, 232, 406, 420, 508, 613, 675
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	5 cut(s)	417, 441, 570, 604, 768
FokI	GGATG	3 cut(s)	340, 394, 809
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	5 cut(s)	417, 441, 570, 604, 768
FspBI	CTAG	4 cut(s)	402, 426, 554, 698
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	3 cut(s)	62, 178, 757
GluI	GCNGC	5 cut(s)	417, 441, 570, 604, 768
GsuI	CTGGAG	1 cut(s)	772
HaeII	RGCGCY	2 cut(s)	64, 759
HaeIII	GGCC	2 cut(s)	93, 484
HapII	CCGG	2 cut(s)	74, 332
HhaI	GCGC	3 cut(s)	63, 179, 758
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	7 cut(s)	163, 236, 410, 424, 512, 617, 679
Hin6I	GCGC	3 cut(s)	61, 177, 756
HinP1I	GCGC	3 cut(s)	61, 177, 756
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HpaII	CCGG	2 cut(s)	74, 332
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	4 cut(s)	36, 171, 354, 619
Hpy188I	TCNGA	2 cut(s)	68, 381
Hpy188III	TCNNGA	4 cut(s)	431, 698, 710, 751
Hpy8I	GTNNAC	4 cut(s)	36, 171, 354, 619
HpyAV	CCTTC	4 cut(s)	178, 318, 331, 697
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	2 cut(s)	342, 621
HpyCH4V	TGCA	5 cut(s)	517, 683, 781, 800, 805
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 185, 575, 764, 773
HpyF3I	CTNAG	2 cut(s)	96, 831
HpySE526I	ACGT	2 cut(s)	342, 621
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	7 cut(s)	163, 236, 410, 424, 512, 617, 679
HspAI	GCGC	3 cut(s)	61, 177, 756
KasI	GGCGCC	1 cut(s)	60
KflI	GGGWCCC	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	4 cut(s)	68, 76, 587, 753
Lsp1109I	GCAGC	4 cut(s)	403, 427, 581, 754
LweI	GCATC	3 cut(s)	295, 318, 787
MaeI	CTAG	4 cut(s)	402, 426, 554, 698
MaeII	ACGT	2 cut(s)	342, 621
MaeIII	GTNAC	4 cut(s)	154, 547, 650, 835
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	254, 314, 496, 532
MfeI	CAATTG	1 cut(s)	581
MhlI	GDGCHC	4 cut(s)	26, 73, 456, 580
MluCI	AATT	3 cut(s)	581, 646, 721
Mly113I	GGCGCC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	802
MseI	TTAA	2 cut(s)	117, 720
MspI	CCGG	2 cut(s)	74, 332
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	581
MwoI	GCNNNNNNNGC	5 cut(s)	60, 185, 575, 764, 773
NarI	GGCGCC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	7 cut(s)	163, 236, 410, 424, 512, 617, 679
NlaIV	GGNNCC	3 cut(s)	62, 531, 532
NmuCI	GTSAC	3 cut(s)	154, 650, 835
NsbI	TGCGCA	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	3 cut(s)	410, 617, 679
PciI	ACATGT	2 cut(s)	613, 675
PkrI	GCNGC	5 cut(s)	418, 442, 571, 605, 769
PluTI	GGCGCC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	622
PpuMI	RGGWCCY	1 cut(s)	530
PscI	ACATGT	2 cut(s)	613, 675
PshAI	GACNNNNGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	530
PspN4I	GGNNCC	3 cut(s)	62, 531, 532
PspPI	GGNCC	2 cut(s)	92, 530
PspPPI	RGGWCCY	1 cut(s)	530
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	117, 720
SatI	GCNGC	5 cut(s)	417, 441, 570, 604, 768
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	2 cut(s)	92, 530
ScaI	AGTACT	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	4 cut(s)	26, 73, 456, 580
SfaNI	GCATC	3 cut(s)	295, 318, 787
SfoI	GGCGCC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	3 cut(s)	55, 710, 824
SmoI	CTYRAG	3 cut(s)	55, 710, 824
SnaBI	TACGTA	1 cut(s)	622
Sse9I	AATT	3 cut(s)	581, 646, 721
SsiI	CCGC	5 cut(s)	188, 291, 308, 603, 690
SspDI	GGCGCC	1 cut(s)	60
SspMI	CTAG	4 cut(s)	402, 426, 554, 698
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	82, 159
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	2 cut(s)	345, 624
TaqI	TCGA	1 cut(s)	672
TasI	AATT	3 cut(s)	581, 646, 721
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	606
Tru1I	TTAA	2 cut(s)	117, 720
Tru9I	TTAA	2 cut(s)	117, 720
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	3 cut(s)	154, 650, 835
TseI	GCWGC	4 cut(s)	416, 440, 569, 767
Tsp45I	GTSAC	3 cut(s)	154, 650, 835
TspDTI	ATGAA	3 cut(s)	155, 483, 653
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	530
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	3 cut(s)	410, 617, 679
XspI	CTAG	4 cut(s)	402, 426, 554, 698
ZrmI	AGTACT	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.