Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014573.1

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 296

Gene Structure 296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

tcgtccatggttaagcttaagggggtggggaaacccgcggatccgcctcgcaacccggaggcccctcttgtatcggatgagctttctcacctcgaaatcgagctccaaatccacagagatgagacccgtgctcgcttggaggagctacaagcttcgatccaggactctctagctacttccttggcccaatttaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

65

Amino Acids

7.19

Weight (kDa)

5.21

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	36, 38, 44
AclWI	GGATC	3 cut(s)	35, 48, 151
AflII	CTTAAG	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	6 cut(s)	16, 82, 103, 145, 152, 173
AluI	AGCT	6 cut(s)	16, 82, 103, 145, 152, 173
Alw21I	GWGCWC	2 cut(s)	105, 133
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	35, 48, 151
AoxI	GGCC	2 cut(s)	60, 183
AspS9I	GGNCC	2 cut(s)	61, 184
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	105, 133
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	56, 161
BmgT120I	GGNCC	2 cut(s)	61, 184
BmiI	GGNNCC	2 cut(s)	42, 63
BmrFI	CCNGG	2 cut(s)	56, 161
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	6, 36, 180
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	6, 36, 180
BseGI	GGATG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	62, 185
BsiHKAI	GWGCWC	2 cut(s)	105, 133
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	62, 185
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	105, 133
Bsp143I	GATC	2 cut(s)	40, 156
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	36, 38, 44
BspANI	GGCC	2 cut(s)	62, 185
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	42, 63
BspPI	GGATC	3 cut(s)	35, 48, 151
BspTI	CTTAAG	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	6, 36, 180
BssMI	GATC	2 cut(s)	40, 156
BssT1I	CCWWGG	2 cut(s)	6, 180
Bst2UI	CCWGG	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	2 cut(s)	6, 36
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	43, 159
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	40, 156
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	54, 159
BstUI	CGCG	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	62, 185
BtgI	CCRYGG	2 cut(s)	6, 36
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	61, 184
Cfr42I	CCGCGG	1 cut(s)	39
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	8 cut(s)	16, 62, 82, 103, 145, 152, 173, 185
CviKI_1	RGCY	8 cut(s)	16, 62, 82, 103, 145, 152, 173, 185
DpnI	GATC	2 cut(s)	42, 158
DpnII	GATC	2 cut(s)	40, 156
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	6, 180
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	6, 180
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	6, 180
FaeI	CATG	1 cut(s)	10
FaiI	YATR	1 cut(s)	8
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	62, 185
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	10
HindIII	AAGCTT	2 cut(s)	14, 150
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	10
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	40, 156
LmnI	GCTCC	2 cut(s)	108, 142
LpnPI	CCDG	3 cut(s)	69, 146, 173
MaeI	CTAG	1 cut(s)	170
MalI	GATC	2 cut(s)	42, 158
MboI	GATC	2 cut(s)	40, 156
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	105, 133
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	52, 57, 75, 101, 133
MseI	TTAA	3 cut(s)	12, 18, 192
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	56, 161
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	38
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	40, 156
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	42, 63
PfoI	TCCNGGA	1 cut(s)	159
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	42, 63
PspPI	GGNCC	2 cut(s)	61, 184
PsuI	RGATCY	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	12, 18, 192
Sau3AI	GATC	2 cut(s)	40, 156
Sau96I	GGNCC	2 cut(s)	61, 184
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	56, 161
SduI	GDGCHC	2 cut(s)	105, 133
SetI	ASST	7 cut(s)	18, 84, 93, 105, 147, 154, 175
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	3 cut(s)	36, 38, 44
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	54, 159
StyI	CCWWGG	2 cut(s)	6, 180
TaqI	TCGA	3 cut(s)	93, 99, 155
TasI	AATT	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	12, 18, 192
Tru9I	TTAA	3 cut(s)	12, 18, 192
Vha464I	CTTAAG	1 cut(s)	17
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.