Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Reverse (-)

23923762 .. 23924259

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33112.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTAAGCTCAAAAACGATGGGAAATCCAACCTGGATGCGCCGGAGGTTTCGGGGGAGCTTGCTCACCTGGAAATGGAATTCCAGATCCATCGTGATGAGACGAGTAGCCGCCTTGATGAGATGCAGCAATCCTTGCGCTCTGATATGCAGGCGTCGCTTTCCGACTTCAGGTCTATACTCATGGAGGAGTTTAAGGCTCAACTCAGTGCTTTTGCGAAAGCTCATGTTGCTACCACAACTACGACAGTTGGCCAAAGTCCTCATCAAGAGAACCGGGTCCGATTTGGCTCCTTGGAGGGCTCTGCTTGTTCTTCTACGTTCGCCAGATCTGAGGGTTTCCAAGGACCATTGTCTCGTATTGGGGGTAACGATGTTCCTCCTTTACATTCCTCTTCTAAAATAGTGCATGAACTTGGAGTTGATGATTTTGGATGTGATTCTGTGTGTGGACGTTTGAATGTGAGTGTTGGCTCTCAATTGGGGAAAAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.79

Weight (kDa)

5.47

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	76, 171
AgsI	TTSAA	1 cut(s)	460
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	33, 69
AluBI	AGCT	3 cut(s)	10, 61, 224
AluI	AGCT	3 cut(s)	10, 61, 224
Alw26I	GTCTC	2 cut(s)	95, 360
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	43, 141
AspS9I	GGNCC	2 cut(s)	280, 347
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	280, 347
BalI	TGGCCA	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	14, 99
BciT130I	CCWGG	2 cut(s)	35, 71
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	95, 360
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	2 cut(s)	112, 128
BlsI	GCNGC	2 cut(s)	113, 129
Bme1390I	CCNGG	3 cut(s)	35, 71, 278
Bme18I	GGWCC	2 cut(s)	280, 347
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	280, 347
BmiI	GGNNCC	2 cut(s)	281, 292
BmrFI	CCNGG	3 cut(s)	35, 71, 278
BmsI	GCATC	2 cut(s)	28, 114
BoxI	GACNNNNGTC	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	294, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 171
BseBI	CCWGG	2 cut(s)	35, 71
BseDI	CCNNGG	2 cut(s)	294, 343
BseGI	GGATG	2 cut(s)	43, 440
BseLI	CCNNNNNNNGG	2 cut(s)	76, 171
BseMII	CTCAG	2 cut(s)	220, 324
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	139
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	44, 277
BslI	CCNNNNNNNGG	2 cut(s)	76, 171
BsmAI	GTCTC	2 cut(s)	95, 360
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	87, 329
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	219, 325
BspLI	GGNNCC	2 cut(s)	281, 292
BspPI	GGATC	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	294, 343
BssMI	GATC	2 cut(s)	87, 329
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	294, 343
Bst2UI	CCWGG	2 cut(s)	35, 71
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	63, 153
BstDEI	CTNAG	2 cut(s)	206, 333
BstF5I	GGATG	2 cut(s)	43, 440
BstHHI	GCGC	2 cut(s)	43, 141
BstKTI	GATC	2 cut(s)	90, 332
BstMAI	GTCTC	2 cut(s)	95, 360
BstMBI	GATC	2 cut(s)	87, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 157, 230
BstNI	CCWGG	2 cut(s)	35, 71
BstPAI	GACNNNNGTC	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	33, 69, 276
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	87, 329
BstYI	RGATCY	2 cut(s)	87, 329
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	43, 440
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	63, 153
CfoI	GCGC	2 cut(s)	43, 141
Cfr13I	GGNCC	2 cut(s)	280, 347
CseI	GACGC	1 cut(s)	144
CviAII	CATG	3 cut(s)	184, 227, 410
CviJI	RGCY	9 cut(s)	10, 61, 111, 200, 224, 255, 291, 303, 474
CviKI_1	RGCY	9 cut(s)	10, 61, 111, 200, 224, 255, 291, 303, 474
DdeI	CTNAG	2 cut(s)	206, 333
DpnI	GATC	2 cut(s)	89, 331
DpnII	GATC	2 cut(s)	87, 329
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	294, 343
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	280, 347
Eco57I	CTGAAG	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	33, 69
EcoT14I	CCWWGG	2 cut(s)	294, 343
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	294, 343
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	3 cut(s)	187, 230, 413
FaiI	YATR	5 cut(s)	149, 179, 185, 228, 411
FatI	CATG	3 cut(s)	183, 226, 409
Fnu4HI	GCNGC	2 cut(s)	112, 128
FokI	GGATG	2 cut(s)	50, 447
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	112, 128
GlaI	GCGC	2 cut(s)	42, 140
GluI	GCNGC	2 cut(s)	112, 128
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	44, 277
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	2 cut(s)	43, 141
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	187, 230, 413
Hin6I	GCGC	2 cut(s)	41, 139
HinP1I	GCGC	2 cut(s)	41, 139
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	2 cut(s)	44, 277
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	145, 166, 284, 334
Hpy188III	TCNNGA	3 cut(s)	85, 95, 269
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	320, 454
HpyCH4V	TGCA	3 cut(s)	127, 151, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 157, 230
HpyF3I	CTNAG	2 cut(s)	206, 333
HpySE526I	ACGT	2 cut(s)	320, 454
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	187, 230, 413
HspAI	GCGC	2 cut(s)	41, 139
Kzo9I	GATC	2 cut(s)	87, 329
LmnI	GCTCC	2 cut(s)	58, 296
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	28, 114
MaeII	ACGT	2 cut(s)	320, 454
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	89, 331
MboI	GATC	2 cut(s)	87, 329
MboII	GAAGA	2 cut(s)	306, 387
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	2 cut(s)	87, 329
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	2 cut(s)	80, 479
MluNI	TGGCCA	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	54, 189
MnlI	CCTC	7 cut(s)	40, 181, 273, 292, 328, 390, 403
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	2 cut(s)	44, 277
MspR9I	CCNGG	3 cut(s)	35, 71, 278
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	35, 71
MwoI	GCNNNNNNNGC	3 cut(s)	136, 157, 230
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	87, 329
NlaIII	CATG	3 cut(s)	187, 230, 413
NlaIV	GGNNCC	2 cut(s)	281, 292
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	113, 129
PshAI	GACNNNNGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	33, 69
PspGI	CCWGG	2 cut(s)	33, 69
PspN4I	GGNNCC	2 cut(s)	281, 292
PspPI	GGNCC	2 cut(s)	280, 347
PsuI	RGATCY	2 cut(s)	87, 329
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	112, 128
Sau3AI	GATC	2 cut(s)	87, 329
Sau96I	GGNCC	2 cut(s)	280, 347
ScrFI	CCNGG	3 cut(s)	35, 71, 278
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	9 cut(s)	12, 36, 51, 63, 72, 176, 226, 323, 457
SfaNI	GCATC	2 cut(s)	28, 114
SinI	GGWCC	2 cut(s)	280, 347
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	80, 479
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	33, 69, 276
StyI	CCWWGG	2 cut(s)	294, 343
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	323, 457
TasI	AATT	2 cut(s)	80, 479
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	280, 347
XapI	RAATTY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.