FvH4_3g29560

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005531
Physical Location & Seq
Reverse (-)
22583902 .. 22585298
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29560.t1

Sequence Viewer

Length: 651 bp
ATGATGAAGAGTCCGATGGTGGTGCTGGTTTTAGTGGCGGCGATGCTGACGTGTCTGGAGGCGATTGAGTCGCCGCAGTACACTGTGGTGCACTTGGAATCGGATTTTGAGATTAGAGATTACAGAGACGGCGCGTGGATGTCTGCTCCTGTTAAAGACATCTCGTTTGAAAAGGCCACCAGAAATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCCAATTTGAATTCCTCCCGAATTGCAATGACGGCGCCTGTGCTGACAAGCATAGTCCCTGGAGCTGGACCTCTGCACTCATCCGCATACTTTGTGAGATTCTTTTTGCCAGTGAAATTTCAAGCCTCCCCACCCACACCCCTCCCGGAACTCAACTTGAAACCTTATACATGGGACAGTCGTTACATCGCAGTCAGGAAATTCTCAGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTCGCCACCAGCCTTAGCAGGTCTCCGTGGGCAAACTGTACCTCAGAAGAAAGTAGCTCTGCTTACTCGATTGCGCAGTATAACTCCCCATTCAAGTTTATTGGGCGTGTGAATGAAGTTTGGGTCGATGTCAATGCGTCTGGATCAGAGGACGATAAATACAGTGAAGTAGTTACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

217

Amino Acids

24.17

Weight (kDa)

6.31

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 22 - 198 7.2e-55 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 477
AccB1I GGYRCC 2 cut(s) 218, 253
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 38, 74, 303
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 3 cut(s) 229, 335, 419
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 3 cut(s) 80, 209, 508
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 5 cut(s) 170, 229, 341, 379, 562
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 277
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 2 cut(s) 284, 525
AluI AGCT 2 cut(s) 284, 525
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 120, 495
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 1 cut(s) 619
AoxI GGCC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 89
ApoI RAATTY 3 cut(s) 229, 335, 419
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 3 cut(s) 134, 256, 544
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 218, 253
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 10
BceAI ACGGC 2 cut(s) 145, 267
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 584, 618
BciT130I CCWGG 1 cut(s) 279
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 120, 495
BfoI RGCGCY 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 477
BisI GCNGC 2 cut(s) 39, 74
BlsI GCNGC 2 cut(s) 40, 75
Bme1390I CCNGG 2 cut(s) 279, 365
Bme18I GGWCC 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 220, 255
BmrFI CCNGG 2 cut(s) 279, 365
BmsI GCATC 1 cut(s) 33
BpmI CTGGAG 2 cut(s) 77, 300
Bpu10I CCTNAGC 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 214, 277, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 205, 329
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 214, 277, 494
BseGI GGATG 3 cut(s) 144, 210, 299
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 438, 525
BseNI ACTGG 2 cut(s) 205, 329
BseSI GKGCMC 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 2 cut(s) 218, 253
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 2 cut(s) 260, 407
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 120, 495
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 260, 407
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 611
BspACI CCGC 3 cut(s) 38, 74, 303
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 437, 524
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 220, 255
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 1 cut(s) 619
BspT107I GGYRCC 2 cut(s) 218, 253
BspTNI GGTCTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 2 cut(s) 205, 329
BssECI CCNNGG 3 cut(s) 214, 277, 494
BssMI GATC 1 cut(s) 611
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 4 cut(s) 85, 398, 506, 632
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 424, 482, 511
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 3 cut(s) 144, 210, 299
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 3 cut(s) 134, 256, 544
BstKTI GATC 1 cut(s) 614
BstMAI GTCTC 2 cut(s) 120, 495
BstMBI GATC 1 cut(s) 611
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 277, 363
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 494
BtgZI GCGATG 2 cut(s) 56, 391
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 3 cut(s) 144, 210, 299
BtsIMutI CAGTG 3 cut(s) 81, 336, 637
BveI ACCTGC 1 cut(s) 477
CfoI GCGC 3 cut(s) 134, 256, 544
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 594
Csp6I GTAC 3 cut(s) 79, 208, 507
CviAII CATG 1 cut(s) 390
CviJI RGCY 7 cut(s) 176, 189, 199, 284, 344, 480, 525
CviKI_1 RGCY 7 cut(s) 176, 189, 199, 284, 344, 480, 525
CviQI GTAC 3 cut(s) 79, 208, 507
DdeI CTNAG 3 cut(s) 424, 482, 511
DinI GGCGCC 1 cut(s) 255
DpnI GATC 1 cut(s) 613
DpnII GATC 1 cut(s) 611
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco130I CCWWGG 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 214
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 1 cut(s) 393
FaiI YATR 5 cut(s) 272, 307, 387, 391, 549
FaqI GGGAC 2 cut(s) 260, 407
FatI CATG 1 cut(s) 389
Fnu4HI GCNGC 2 cut(s) 39, 74
FokI GGATG 3 cut(s) 151, 197, 286
Fsp4HI GCNGC 2 cut(s) 39, 74
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 3 cut(s) 133, 255, 543
GluI GCNGC 2 cut(s) 39, 74
GsuI CTGGAG 2 cut(s) 77, 300
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 594
HhaI GCGC 3 cut(s) 134, 256, 544
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 393
Hin6I GCGC 3 cut(s) 132, 254, 542
HinP1I GCGC 3 cut(s) 132, 254, 542
HinfI GANTC 4 cut(s) 10, 68, 98, 318
HpaII CCGG 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 81, 91
Hpy188I TCNGA 4 cut(s) 15, 103, 514, 616
Hpy188III TCNNGA 5 cut(s) 56, 237, 415, 426, 609
Hpy8I GTNNAC 2 cut(s) 81, 91
HpyCH4III ACNGT 4 cut(s) 85, 398, 506, 632
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 91, 245, 295, 434, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 424, 482, 511
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 393
HspAI GCGC 3 cut(s) 132, 254, 542
KasI GGCGCC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 611
LmnI GCTCC 2 cut(s) 151, 281
LweI GCATC 1 cut(s) 33
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 3 cut(s) 401, 443, 640
MalI GATC 1 cut(s) 613
MboI GATC 1 cut(s) 611
MboII GAAGA 2 cut(s) 19, 527
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 5 cut(s) 223, 229, 240, 335, 419
Mly113I GGCGCC 1 cut(s) 254
MlyI GAGTC 2 cut(s) 19, 77
MnlI CCTC 7 cut(s) 52, 244, 300, 355, 371, 520, 610
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 279, 365
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 251
NarI GGCGCC 1 cut(s) 254
NciI CCSGG 1 cut(s) 365
NdeII GATC 1 cut(s) 611
NlaIII CATG 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 220, 255
NsbI TGCGCA 1 cut(s) 543
OliI CACNNNNGTG 1 cut(s) 86
PfeI GAWTC 2 cut(s) 98, 318
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 2 cut(s) 40, 75
PleI GAGTC 2 cut(s) 18, 76
PluTI GGCGCC 1 cut(s) 257
PpsI GAGTC 2 cut(s) 18, 76
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 220, 255
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 3 cut(s) 80, 209, 508
RsaNI GTAC 3 cut(s) 79, 208, 507
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 39, 74
Sau3AI GATC 1 cut(s) 611
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 2 cut(s) 19, 77
ScrFI CCNGG 2 cut(s) 279, 365
SduI GDGCHC 1 cut(s) 93
SetI ASST 9 cut(s) 53, 220, 286, 292, 385, 491, 512, 527, 647
SfaNI GCATC 1 cut(s) 33
SfoI GGCGCC 1 cut(s) 255
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 5 cut(s) 223, 229, 240, 335, 419
SsiI CCGC 3 cut(s) 38, 74, 303
SspDI GGCGCC 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 277, 363
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 4 cut(s) 85, 398, 506, 632
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 536, 594
TasI AATT 5 cut(s) 223, 229, 240, 335, 419
TatI WGTACW 2 cut(s) 78, 207
TauI GCSGC 2 cut(s) 41, 76
TfiI GAWTC 2 cut(s) 98, 318
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 3 cut(s) 88, 336, 637
TspDTI ATGAA 2 cut(s) 20, 597
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 88, 336, 637
VneI GTGCAC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 3 cut(s) 229, 335, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.