Rh6AG405800

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005531
Physical Location & Seq
Reverse (-)
60316251 .. 60324761
8511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG405800.1

Sequence Viewer

Length: 423 bp
ATGACAGCTCCTGTGCTGACAAGCATTGACCATGGAGGTGGCCCTCTGCACTCATCCGCATGCTTTGTGAGATTCTATTTGCCAATGAAGTTTCAAGCTTCCCCACCCACACCCCTTCCAGAACTCAACTTGAAACCTTATACATGGGATAGTCATTACACTGCGGTCAGGAAATTCTCGGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTCGCCACCAGACTTAGCAGGTCTCCATGGGCTAATTCTACATCAGAAGAAAGTAGATATGCTTACTCGATTACACAGTATAACTCCCCTTTCCGGTTGATTGGGTGTGTGAATGAAGTTTGGGTCGATATCAACCTGCAGATTCCTCATCCTTCCACTCAATCTCTTCTTCTTTCTCTTCGTCCTTGTTCAGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

140

Amino Acids

15.7

Weight (kDa)

9.12

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 1 - 116 1.3e-25 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 231, 366
AciI CCGC 2 cut(s) 57, 164
AcsI RAATTY 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 2 cut(s) 95, 133
AluBI AGCT 2 cut(s) 8, 98
AluI AGCT 2 cut(s) 8, 98
Alw26I GTCTC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 359
BfuAI ACCTGC 2 cut(s) 231, 366
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 31, 248
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 31, 248
BseGI GGATG 2 cut(s) 53, 370
BseLI CCNNNNNNNGG 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 178
Bsp19I CCATGG 2 cut(s) 31, 248
BspACI CCGC 2 cut(s) 57, 164
BspANI GGCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 2 cut(s) 231, 366
BspTNI GGTCTC 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 31, 248
BssT1I CCWWGG 2 cut(s) 31, 248
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 2 cut(s) 393, 405
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 2 cut(s) 31, 248
BstF5I GGATG 2 cut(s) 53, 370
BstMAI GTCTC 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 31, 248
BtsCI GGATG 2 cut(s) 53, 370
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 2 cut(s) 231, 366
Cac8I GCNNGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 4 cut(s) 32, 60, 144, 249
CviJI RGCY 5 cut(s) 8, 42, 98, 254, 416
CviKI_1 RGCY 5 cut(s) 8, 42, 98, 254, 416
DdeI CTNAG 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 393, 405
EarI CTCTTC 2 cut(s) 393, 405
Eco130I CCWWGG 2 cut(s) 31, 248
Eco31I GGTCTC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 31, 248
ErhI CCWWGG 2 cut(s) 31, 248
FaeI CATG 4 cut(s) 35, 63, 147, 252
FaiI YATR 7 cut(s) 33, 61, 141, 145, 250, 282, 303
FatI CATG 4 cut(s) 31, 59, 143, 248
FokI GGATG 2 cut(s) 40, 357
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 316
Hin1II CATG 4 cut(s) 35, 63, 147, 252
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 2 cut(s) 72, 364
HpaII CCGG 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 119, 169, 180
HpyAV CCTTC 2 cut(s) 125, 384
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 49, 188, 208, 361
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 4 cut(s) 35, 63, 147, 252
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 7 cut(s) 24, 132, 154, 226, 244, 329, 371
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 4 cut(s) 281, 380, 383, 392
MluCI AATT 2 cut(s) 173, 256
MnlI CCTC 3 cut(s) 29, 54, 378
MslI CAYNNNNRTG 2 cut(s) 36, 58
MspI CCGG 1 cut(s) 316
NcoI CCATGG 2 cut(s) 31, 248
NlaIII CATG 4 cut(s) 35, 63, 147, 252
NspI RCATGY 1 cut(s) 63
PaeI GCATGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 72, 364
PspPI GGNCC 1 cut(s) 41
PstI CTGCAG 1 cut(s) 363
PstNI CAGNNNCTG 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 36, 58
Sau96I GGNCC 1 cut(s) 41
SetI ASST 6 cut(s) 10, 40, 100, 139, 245, 360
SfcI CTRYAG 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 36, 58
SphI GCATGC 1 cut(s) 63
Sse9I AATT 2 cut(s) 173, 256
SsiI CCGC 2 cut(s) 57, 164
StyI CCWWGG 2 cut(s) 31, 248
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 290, 348
TasI AATT 2 cut(s) 173, 256
TfiI GAWTC 2 cut(s) 72, 364
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 101, 351
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.