Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005531

Physical Location & Seq

Genomic Coordinates Reverse (-)

9284725 .. 9286768

Gene Structure 2044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACGAAGAGGCCAAGGTTGTCAATGGCACTGCTAGCAATGGTGGTTCTGCCAAATTTTCTATGTGTATGCAACGCGATTGAGTCACCACAGTACTCGGTGGTTCACTCAGAATCAGACTTTGAGATCAGACTTTACAGAGAGACCTCATGGATGTCTGCTCCTGTTAAAGATATCTCCTTTGAGAAGGCCACCAGAAATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCCAATTTGAATTTCTCTCGAATTGCAATGACAGCTCCCGTGTTGACAAGCATAGTCCCAGGAGCTGGCCCTCTTCACTCATCGGCCTATTTTGTTAGATTCTACTTGCCTACAAAGTTCCAAACTACTCCACCCACACCTCTCCCTGAACTCAGCTTGGAACCCTATACCTGGGAAGGTCATTACGTTGCCGTCAGGAAGTTCTCTGGATTTGCAAGAGATACTAACATAGTGCAAGAGGCAGAGAAGCTTGCCACCAGCTTGAGCAGGTCTCCATGGGCAAATTCTACATCAGAAGAAAGCAGCTATGCTTATTCAATCGCACAGTACAGCTCCCCATTCCGGATTATTGGGCGTGTGAATGAGGTTTGGGTGGATGTCAATCCATCTGGTTTAGGTGGCTATAAATACAGTGAAATAGCTACGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

222

Amino Acids

24.81

Weight (kDa)

8.49

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29560
malus_domestica	MD11G1160600.v1.1
prunus_persica	Prupe.6G124100_v2.0.a1
pyrus_communis	pycom11g13130
rosa_chinensis	RchiOBHm_Chr3g0465721 RchiOBHm_Chr3g0465771 RchiOBHm_Chr5g0054621 RchiOBHm_Chr6g0271841
rosa_laevigata	RLG00000014360 RLG00000034940
rosa_multiflora	Rmu_sc0000704.1_g000008 Rmu_sc0019242.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026340
rosa_rugosa	Rorug05G0287100
rosa_samantha	Rh3BG143900 Rh3CG145300 Rh3CG145600 Rh3DG145500 Rh5AG357500 Rh5BG369600 Rh5BG522400 Rh5CG392200 Rh5CG546400 Rh5DG383200 Rh6AG405800 Rh6BG216900
rosa_wichuraiana	Rw5G033570 Rw5G033780 Rw6G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	576
AcsI	RAATTY	3 cut(s)	55, 244, 517
AfaI	GTAC	3 cut(s)	95, 224, 563
AfiI	CCNNNNNNNGG	3 cut(s)	299, 405, 576
AgsI	TTSAA	2 cut(s)	244, 552
AjnI	CCWGG	2 cut(s)	292, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	8 cut(s)	269, 299, 390, 484, 495, 540, 567, 656
AluI	AGCT	8 cut(s)	269, 299, 390, 484, 495, 540, 567, 656
Alw26I	GTCTC	2 cut(s)	137, 510
AlwNI	CAGNNNCTG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	576
AoxI	GGCC	4 cut(s)	11, 189, 301, 318
ApeKI	GCWGC	1 cut(s)	537
ApoI	RAATTY	3 cut(s)	55, 244, 517
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	78
AsuNHI	GCTAGC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	549
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	2 cut(s)	294, 406
BcoDI	GTCTC	2 cut(s)	137, 510
BfaI	CTAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	538
BlsI	GCNGC	1 cut(s)	539
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	294, 406
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	235, 396
BmrFI	CCNGG	2 cut(s)	294, 406
BmtI	GCTAGC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	490, 522
BpuEI	CTTGAG	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	615
BsaI	GGTCTC	2 cut(s)	137, 510
BsaJI	CCNNGG	5 cut(s)	14, 229, 292, 405, 509
BsaWI	WCCGGW	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 405, 576
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	45, 267
Bse8I	GATNNNNATC	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	294, 406
BseDI	CCNNGG	5 cut(s)	14, 229, 292, 405, 509
BseGI	GGATG	3 cut(s)	159, 225, 616
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	299, 405, 576
BseMI	GCAATG	2 cut(s)	45, 267
BseMII	CTCAG	2 cut(s)	123, 400
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	13, 191, 303, 320
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	577
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	299, 405, 576
BsmAI	GTCTC	2 cut(s)	137, 510
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	13, 191, 303, 320
Bso31I	GGTCTC	2 cut(s)	137, 510
Bsp13I	TCCGGA	1 cut(s)	576
Bsp143I	GATC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	509
BspANI	GGCC	4 cut(s)	13, 191, 303, 320
BspCNI	CTCAG	2 cut(s)	122, 399
BspEI	TCCGGA	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	235, 396
BspMI	ACCTGC	1 cut(s)	492
BspOI	GCTAGC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	2 cut(s)	137, 510
BsrDI	GCAATG	2 cut(s)	45, 267
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	5 cut(s)	14, 229, 292, 405, 509
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	3 cut(s)	14, 229, 509
Bst2UI	CCWGG	2 cut(s)	294, 406
Bst4CI	ACNGT	3 cut(s)	93, 561, 647
Bst6I	CTCTTC	2 cut(s)	2, 312
BstC8I	GCNNGC	3 cut(s)	36, 301, 486
BstDEI	CTNAG	2 cut(s)	109, 386
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	159, 225, 616
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	2 cut(s)	137, 510
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 266
BstNI	CCWGG	2 cut(s)	294, 406
BstSCI	CCNGG	2 cut(s)	292, 404
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	549
BsuRI	GGCC	4 cut(s)	13, 191, 303, 320
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	159, 225, 616
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 652
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	36, 301, 486
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	3 cut(s)	94, 223, 562
CviAII	CATG	2 cut(s)	150, 510
CviQI	GTAC	3 cut(s)	94, 223, 562
DdeI	CTNAG	2 cut(s)	109, 386
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	2, 312
EarI	CTCTTC	2 cut(s)	2, 312
Eco130I	CCWWGG	3 cut(s)	14, 229, 509
Eco31I	GGTCTC	2 cut(s)	137, 510
Eco32I	GATATC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	292, 404
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	14, 229, 509
ErhI	CCWWGG	3 cut(s)	14, 229, 509
FaeI	CATG	2 cut(s)	153, 513
FaiI	YATR	9 cut(s)	64, 70, 151, 287, 402, 464, 511, 543, 639
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	149, 509
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	3 cut(s)	166, 212, 623
Fsp4HI	GCNGC	1 cut(s)	538
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	538
HaeIII	GGCC	4 cut(s)	13, 191, 303, 320
HapII	CCGG	1 cut(s)	577
Hin1II	CATG	2 cut(s)	153, 513
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	83, 113, 333
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	106, 279
Hpy188I	TCNGA	4 cut(s)	112, 118, 131, 529
Hpy188III	TCNNGA	5 cut(s)	252, 430, 441, 577, 663
Hpy8I	GTNNAC	2 cut(s)	106, 279
HpyAV	CCTTC	2 cut(s)	181, 404
HpyCH4III	ACNGT	3 cut(s)	93, 561, 647
HpyCH4IV	ACGT	2 cut(s)	420, 659
HpyCH4V	TGCA	4 cut(s)	72, 260, 449, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 266
HpyF3I	CTNAG	2 cut(s)	109, 386
HpySE526I	ACGT	2 cut(s)	420, 659
Hsp92II	CATG	2 cut(s)	153, 513
Kpn2I	TCCGGA	1 cut(s)	576
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	166, 274, 296, 572
Lsp1109I	GCAGC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	420, 659
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	19, 299, 542
MluCI	AATT	5 cut(s)	55, 238, 244, 255, 517
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	3, 157, 315, 384, 466, 592
MroI	TCCGGA	1 cut(s)	576
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	2 cut(s)	294, 406
MvaI	CCWGG	2 cut(s)	294, 406
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	35, 266
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	1 cut(s)	126
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	153, 513
NlaIV	GGNNCC	2 cut(s)	235, 396
NmuCI	GTSAC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	113, 333
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	539
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	292, 404
PspGI	CCWGG	2 cut(s)	292, 404
PspN4I	GGNNCC	2 cut(s)	235, 396
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	3 cut(s)	95, 224, 563
RsaNI	GTAC	3 cut(s)	94, 223, 562
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	294, 406
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	5 cut(s)	55, 238, 244, 255, 517
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	292, 404
StyI	CCWWGG	3 cut(s)	14, 229, 509
TaaI	ACNGT	3 cut(s)	93, 561, 647
TaiI	ACGT	2 cut(s)	423, 662
TaqI	TCGA	1 cut(s)	253
TasI	AATT	5 cut(s)	55, 238, 244, 255, 517
TatI	WGTACW	3 cut(s)	93, 222, 561
TfiI	GAWTC	2 cut(s)	113, 333
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	36, 652
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	537
Tsp45I	GTSAC	1 cut(s)	84
TspRI	CASTG	2 cut(s)	36, 652
Van91I	CCANNNNNTGG	1 cut(s)	299
XapI	RAATTY	3 cut(s)	55, 244, 517
XspI	CTAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.