Rh3DG145500

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005531
Physical Location & Seq
Reverse (-)
12435222 .. 12436965
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG145500.1

Sequence Viewer

Length: 510 bp
ATGTACCTTGCTATAGCTGCTCTTAAGGTCTTAAGCCTTGCTCTTAAGACCACCAGAAATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCTAATTTGAATTGCTCTCGAATTGGCATGACAGCTCCTGTGCTGACAAGCATTGTCCCTGGAGCTGGCCCTCTGCACTCATCCGCATGCTTTGTGAGATTCTATTTGCCAATGAAGTTTCAAGCTTCCCCACCCACACCCCTTCCAGAACTCAACTTGAAACCTTATACATGTGATAGTCATTACACTGCGGTCAGGAAATTCTCGGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTCGCCACCAGACTTAGCAGGTCTCCATGGGCTAATTCTACATCAGAAGAAAGTAGATCTACTTACTCGATTGCACAGTATAACTCCCCTTTCCGGTTGATTGGGTGTGTGAATGAAGTTTGGGTCGATGTCAATGCCTCTGGATTGCTTTTCGATTCTTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

169

Amino Acids

18.77

Weight (kDa)

9.44

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 17 - 156 1e-36 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 351
AciI CCGC 2 cut(s) 177, 284
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 5, 83
AfiI CCNNNNNNNGG 2 cut(s) 158, 435
AflII CTTAAG 3 cut(s) 23, 31, 44
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 103, 215, 253
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 17, 128, 158, 218
AluI AGCT 4 cut(s) 17, 128, 158, 218
Alw26I GTCTC 1 cut(s) 369
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 298
BbvI GCAGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 12
BfrI CTTAAG 3 cut(s) 23, 31, 44
BfuAI ACCTGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 398
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 88, 151, 368
BsaWI WCCGGW 1 cut(s) 435
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 435
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 88, 151, 368
BseGI GGATG 2 cut(s) 84, 173
BseLI CCNNNNNNNGG 2 cut(s) 158, 435
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 158, 435
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 369
BsoBI CYCGRG 1 cut(s) 298
Bsp143I GATC 1 cut(s) 398
Bsp19I CCATGG 1 cut(s) 368
BspACI CCGC 2 cut(s) 177, 284
BspANI GGCC 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 351
BspTI CTTAAG 3 cut(s) 23, 31, 44
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 88, 151, 368
BssMI GATC 1 cut(s) 398
BssT1I CCWWGG 2 cut(s) 88, 368
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 420
BstAFI CTTAAG 3 cut(s) 23, 31, 44
BstC8I GCNNGC 2 cut(s) 160, 181
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 84, 173
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 398
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 2 cut(s) 183, 267
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 368
BtsCI GGATG 2 cut(s) 84, 173
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 160, 181
CaiI CAGNNNCTG 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 4, 82
CviAII CATG 4 cut(s) 121, 180, 264, 369
CviJI RGCY 9 cut(s) 17, 36, 63, 73, 128, 158, 162, 218, 374
CviKI_1 RGCY 9 cut(s) 17, 36, 63, 73, 128, 158, 162, 218, 374
CviQI GTAC 2 cut(s) 4, 82
DdeI CTNAG 1 cut(s) 356
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 88, 368
Eco31I GGTCTC 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 88, 368
ErhI CCWWGG 2 cut(s) 88, 368
FaeI CATG 4 cut(s) 124, 183, 267, 372
FaiI YATR 7 cut(s) 14, 122, 181, 261, 265, 370, 423
FaqI GGGAC 1 cut(s) 134
FatI CATG 4 cut(s) 120, 179, 263, 368
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 71, 160
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 436
Hin1II CATG 4 cut(s) 124, 183, 267, 372
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 192, 497
HpaII CCGG 1 cut(s) 436
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 5 cut(s) 111, 239, 289, 300, 483
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4V TGCA 4 cut(s) 169, 308, 328, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 356
Hsp92II CATG 4 cut(s) 124, 183, 267, 372
Kzo9I GATC 1 cut(s) 398
LmnI GCTCC 2 cut(s) 133, 155
Lsp1109I GCAGC 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MboII GAAGA 1 cut(s) 401
MflI RGATCY 1 cut(s) 398
MluCI AATT 5 cut(s) 97, 103, 114, 293, 376
MnlI CCTC 2 cut(s) 174, 490
MseI TTAA 3 cut(s) 24, 32, 45
MslI CAYNNNNRTG 1 cut(s) 178
MspCI CTTAAG 3 cut(s) 23, 31, 44
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 368
NdeII GATC 1 cut(s) 398
NlaIII CATG 4 cut(s) 124, 183, 267, 372
NspI RCATGY 2 cut(s) 183, 267
PaeI GCATGC 1 cut(s) 183
PciI ACATGT 1 cut(s) 263
PfeI GAWTC 2 cut(s) 192, 497
PkrI GCNGC 1 cut(s) 19
PscI ACATGT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 398
RsaI GTAC 2 cut(s) 5, 83
RsaNI GTAC 2 cut(s) 4, 82
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 3 cut(s) 24, 32, 45
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 398
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 153
SetI ASST 9 cut(s) 9, 19, 30, 94, 130, 160, 220, 259, 365
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 3 cut(s) 23, 31, 44
SmoI CTYRAG 3 cut(s) 23, 31, 44
SphI GCATGC 1 cut(s) 183
Sse9I AATT 5 cut(s) 97, 103, 114, 293, 376
SsiI CCGC 2 cut(s) 177, 284
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 2 cut(s) 88, 368
TaaI ACNGT 1 cut(s) 420
TaqI TCGA 4 cut(s) 112, 410, 468, 495
TasI AATT 5 cut(s) 97, 103, 114, 293, 376
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 2 cut(s) 192, 497
Tru1I TTAA 3 cut(s) 24, 32, 45
Tru9I TTAA 3 cut(s) 24, 32, 45
TscAI CASTG 1 cut(s) 286
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 221, 471
TspRI CASTG 1 cut(s) 286
Vha464I CTTAAG 3 cut(s) 23, 31, 44
XapI RAATTY 1 cut(s) 293
XceI RCATGY 2 cut(s) 183, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.