Rmu_sc0019242.1_g000002

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019242.1
OG0005531
Physical Location & Seq
Reverse (-)
10325 .. 12849
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019242.1_g000002.1.cds

Sequence Viewer

Length: 894 bp
atggagatggtcaagagtgcgatggtggtggtggtgctagttttggtggcgatggtgccgagtctggaggcgattgaatcgccgcagtacacggtggtgcactgggaatcggagtttgagataagagaatacagagccggcgcgtggatgtctgctcctgttaaagacatctcctttgaaaaggccaccagaaatggcttccacaggctgttccagtacatccaaggtgccaatttgaattactctcgaattgcaatgacggctcctgtgctgacaagcatagtccctggagccggcccgctgcactcatccgcatactttgtgagtttctatttgccagtgaagtttcaagcttccccacccacaccactcccggaactcaacttgaaaccatatacatgggacggtcattacattgcagtcaggaaattctcgggatttgcaagagatagtaacattgtgcaagaagcacagaaactcgccaccagccttagcaggtcaccatgggctaactctacatcagaagaaagtagctatgcttactcgattgcacagtataactccccattccagtgggttgggcgtgtgaatgaaatttgggtcgatgtcaatgccactggattagagggagataatggcgggagcaacctagtgacagcaaagcttgaagtccaagcaatagatgatgaaaacaggtcaatcacctttgttttcctggaaggagatattttgaaggtgtataagagtttcaaggcaaaaattcaagcgatcaaagcaggtaatggtggctgcacagtcaaatggacgttgaattttgagaaggcaactgaaaatgcaccagatccaaaagcctatgcggaacttaattggcgaaaaagtgtccagaggccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

297

Amino Acids

33.13

Weight (kDa)

6.92

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 486, 767
AccB1I GGYRCC 2 cut(s) 55, 227
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 83, 299, 312, 639, 857
AclWI GGATC 1 cut(s) 836
AcsI RAATTY 4 cut(s) 428, 594, 759, 811
AfaI GTAC 2 cut(s) 89, 218
AfiI CCNNNNNNNGG 2 cut(s) 144, 293
AjnI CCWGG 2 cut(s) 286, 714
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 3 cut(s) 353, 534, 664
AluI AGCT 3 cut(s) 353, 534, 664
Alw21I GWGCWC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 98
AlwI GGATC 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 433
AoxI GGCC 3 cut(s) 183, 295, 887
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 301, 789
ApoI RAATTY 4 cut(s) 428, 594, 759, 811
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 492, 694
AvaI CYCGRG 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 55, 227
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 288, 776
BccI CCATC 2 cut(s) 16, 46
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 2 cut(s) 288, 716
BcnI CCSGG 1 cut(s) 374
BfaI CTAG 2 cut(s) 38, 650
BfuAI ACCTGC 2 cut(s) 486, 767
BisI GCNGC 3 cut(s) 83, 302, 790
BlsI GCNGC 3 cut(s) 84, 303, 791
Bme1390I CCNGG 3 cut(s) 288, 374, 716
BmeT110I CYCGRG 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 4 cut(s) 57, 229, 264, 292
BmrFI CCNGG 3 cut(s) 288, 374, 716
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 2 cut(s) 86, 309
Bpu10I CCTNAGC 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 223, 286, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 293
Bse118I RCCGGY 2 cut(s) 137, 293
Bse1I ACTGG 5 cut(s) 107, 214, 338, 571, 622
Bse3DI GCAATG 2 cut(s) 261, 414
BseBI CCWGG 2 cut(s) 288, 716
BseDI CCNNGG 3 cut(s) 223, 286, 503
BseGI GGATG 3 cut(s) 153, 219, 308
BseLI CCNNNNNNNGG 2 cut(s) 144, 293
BseMI GCAATG 2 cut(s) 261, 414
BseNI ACTGG 5 cut(s) 107, 214, 338, 571, 622
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 288, 776
BsgI GTGCAG 2 cut(s) 287, 775
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 3 cut(s) 185, 297, 889
BshNI GGYRCC 2 cut(s) 55, 227
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 3 cut(s) 138, 294, 374
BslFI GGGAC 2 cut(s) 269, 416
BslI CCNNNNNNNGG 2 cut(s) 144, 293
BsmFI GGGAC 2 cut(s) 269, 416
BsnI GGCC 3 cut(s) 185, 297, 889
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 768, 841
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 5 cut(s) 83, 299, 312, 639, 857
BspANI GGCC 3 cut(s) 185, 297, 889
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 4 cut(s) 57, 229, 264, 292
BspMI ACCTGC 2 cut(s) 486, 767
BspPI GGATC 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 55, 227
BsrDI GCAATG 2 cut(s) 261, 414
BsrFI RCCGGY 2 cut(s) 137, 293
BsrI ACTGG 5 cut(s) 107, 214, 338, 571, 622
BssAI RCCGGY 2 cut(s) 137, 293
BssECI CCNNGG 3 cut(s) 223, 286, 503
BssMI GATC 2 cut(s) 768, 841
BssT1I CCWWGG 2 cut(s) 223, 503
Bst2UI CCWGG 2 cut(s) 288, 716
Bst4CI ACNGT 4 cut(s) 94, 407, 555, 796
BstC8I GCNNGC 3 cut(s) 139, 295, 299
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 498
BstF5I GGATG 3 cut(s) 153, 219, 308
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 771, 844
BstMBI GATC 2 cut(s) 768, 841
BstMWI GCNNNNNNNGC 2 cut(s) 260, 773
BstNI CCWGG 2 cut(s) 288, 716
BstPI GGTNACC 1 cut(s) 498
BstSCI CCNGG 3 cut(s) 286, 372, 714
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 288, 776
BstX2I RGATCY 1 cut(s) 841
BstXI CCANNNNNNTGG 3 cut(s) 399, 573, 578
BstYI RGATCY 1 cut(s) 841
BsuRI GGCC 3 cut(s) 185, 297, 889
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 2 cut(s) 35, 65
BtsCI GGATG 3 cut(s) 153, 219, 308
BtsIMutI CAGTG 4 cut(s) 100, 345, 578, 615
BveI ACCTGC 2 cut(s) 486, 767
Cac8I GCNNGC 3 cut(s) 139, 295, 299
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 2 cut(s) 137, 293
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 88, 217
CviAII CATG 2 cut(s) 399, 504
CviQI GTAC 2 cut(s) 88, 217
DdeI CTNAG 1 cut(s) 491
DpnI GATC 2 cut(s) 770, 843
DpnII GATC 2 cut(s) 768, 841
Eco130I CCWWGG 2 cut(s) 223, 503
Eco147I AGGCCT 1 cut(s) 889
Eco88I CYCGRG 1 cut(s) 433
Eco91I GGTNACC 1 cut(s) 498
EcoO65I GGTNACC 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 286, 714
EcoT14I CCWWGG 2 cut(s) 223, 503
ErhI CCWWGG 2 cut(s) 223, 503
FaeI CATG 2 cut(s) 402, 507
FaqI GGGAC 2 cut(s) 269, 416
FatI CATG 2 cut(s) 398, 503
FauI CCCGC 2 cut(s) 306, 632
Fnu4HI GCNGC 3 cut(s) 83, 302, 790
FokI GGATG 3 cut(s) 160, 206, 295
Fsp4HI GCNGC 3 cut(s) 83, 302, 790
FspBI CTAG 2 cut(s) 38, 650
GlaI GCGC 1 cut(s) 142
GluI GCNGC 3 cut(s) 83, 302, 790
GsuI CTGGAG 2 cut(s) 86, 309
HaeIII GGCC 3 cut(s) 185, 297, 889
HapII CCGG 3 cut(s) 138, 294, 374
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 402, 507
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 351, 662
HinfI GANTC 3 cut(s) 61, 77, 107
HpaII CCGG 3 cut(s) 138, 294, 374
HphI GGTGA 2 cut(s) 492, 694
Hpy166II GTNNAC 2 cut(s) 90, 100
Hpy188I TCNGA 2 cut(s) 112, 523
Hpy188III TCNNGA 6 cut(s) 13, 65, 246, 424, 435, 883
Hpy8I GTNNAC 2 cut(s) 90, 100
HpyAV CCTTC 3 cut(s) 713, 727, 814
HpyCH4III ACNGT 4 cut(s) 94, 407, 555, 796
HpyCH4IV ACGT 1 cut(s) 806
HpyCH4V TGCA 9 cut(s) 100, 254, 304, 419, 443, 463, 551, 792, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 773
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 806
Hsp92II CATG 2 cut(s) 402, 507
HspAI GCGC 1 cut(s) 141
KroI GCCGGC 2 cut(s) 137, 293
KroNI GCCGGC 2 cut(s) 139, 295
Kzo9I GATC 2 cut(s) 768, 841
LmnI GCTCC 4 cut(s) 160, 268, 290, 642
Lsp1109I GCAGC 2 cut(s) 288, 776
MaeI CTAG 2 cut(s) 38, 650
MaeII ACGT 1 cut(s) 806
MaeIII GTNAC 3 cut(s) 452, 498, 652
MalI GATC 2 cut(s) 770, 843
MboI GATC 2 cut(s) 768, 841
MboII GAAGA 1 cut(s) 536
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 8 cut(s) 232, 238, 249, 428, 594, 759, 811, 865
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 3 cut(s) 61, 619, 879
MroNI GCCGGC 2 cut(s) 137, 293
MseI TTAA 2 cut(s) 162, 864
MslI CAYNNNNRTG 3 cut(s) 95, 397, 571
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 138, 294, 374
MspR9I CCNGG 3 cut(s) 288, 374, 716
MvaI CCWGG 2 cut(s) 288, 716
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 260, 773
NaeI GCCGGC 2 cut(s) 139, 295
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 503
NdeII GATC 2 cut(s) 768, 841
NgoMIV GCCGGC 2 cut(s) 137, 293
NlaIII CATG 2 cut(s) 402, 507
NlaIV GGNNCC 4 cut(s) 57, 229, 264, 292
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 498, 652
OliI CACNNNNGTG 1 cut(s) 95
PceI AGGCCT 1 cut(s) 889
PdiI GCCGGC 2 cut(s) 139, 295
PfeI GAWTC 2 cut(s) 77, 107
PfoI TCCNGGA 2 cut(s) 372, 714
PkrI GCNGC 3 cut(s) 84, 303, 791
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 286, 714
PspEI GGTNACC 1 cut(s) 498
PspGI CCWGG 2 cut(s) 286, 714
PspN4I GGNNCC 4 cut(s) 57, 229, 264, 292
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 841
RsaI GTAC 2 cut(s) 89, 218
RsaNI GTAC 2 cut(s) 88, 217
RseI CAYNNNNRTG 3 cut(s) 95, 397, 571
SaqAI TTAA 2 cut(s) 162, 864
SatI GCNGC 3 cut(s) 83, 302, 790
Sau3AI GATC 2 cut(s) 768, 841
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 288, 374, 716
SduI GDGCHC 1 cut(s) 102
SmiMI CAYNNNNRTG 3 cut(s) 95, 397, 571
Sse9I AATT 8 cut(s) 232, 238, 249, 428, 594, 759, 811, 865
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 5 cut(s) 83, 299, 312, 639, 857
SspMI CTAG 2 cut(s) 38, 650
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 3 cut(s) 286, 372, 714
StyI CCWWGG 2 cut(s) 223, 503
TaaI ACNGT 4 cut(s) 94, 407, 555, 796
TaiI ACGT 1 cut(s) 809
TaqI TCGA 3 cut(s) 247, 545, 603
TasI AATT 8 cut(s) 232, 238, 249, 428, 594, 759, 811, 865
TatI WGTACW 2 cut(s) 87, 216
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 77, 107
Tru1I TTAA 2 cut(s) 162, 864
Tru9I TTAA 2 cut(s) 162, 864
TscAI CASTG 4 cut(s) 107, 345, 578, 622
TseFI GTSAC 2 cut(s) 498, 652
TseI GCWGC 2 cut(s) 301, 789
Tsp45I GTSAC 2 cut(s) 498, 652
TspDTI ATGAA 2 cut(s) 606, 702
TspRI CASTG 4 cut(s) 107, 345, 578, 622
VneI GTGCAC 1 cut(s) 98
XapI RAATTY 4 cut(s) 428, 594, 759, 811
XspI CTAG 2 cut(s) 38, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.