Rh5BG522400

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005531
Physical Location & Seq
Reverse (-)
82455437 .. 82457151
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG522400.1

Sequence Viewer

Length: 282 bp
ATGCAATCATATTCAGCTAGAGCTGCTCTTAAGGTCTTAAGCCTTGCTCTTAAGACCACCAGAAATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCTAATTTGAATTGCTCTCGAATTGGCATGACAGCTCCTGTGCTGACAAGCATTGTCCCTGGAGCTGGCCCTCTGCACTCATCCGCATGCTTTGGGAGATTCTATTTGCCAATGAAGTTTCAAGCTTCCCCACCCACACCCCTTCCAGAACTCGATCAACTTGAAACCTTATACATGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

93

Amino Acids

10.26

Weight (kDa)

9.92

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 18 - 82 1.5e-15 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 164
AflII CTTAAG 3 cut(s) 29, 37, 50
AgsI TTSAA 3 cut(s) 109, 221, 263
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 5 cut(s) 17, 23, 134, 164, 224
AluI AGCT 5 cut(s) 17, 23, 134, 164, 224
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 18
BfrI CTTAAG 3 cut(s) 29, 37, 50
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 94, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 94, 157
BseGI GGATG 2 cut(s) 90, 179
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 168
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 168
BspTI CTTAAG 3 cut(s) 29, 37, 50
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 94, 157
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 159
BstAFI CTTAAG 3 cut(s) 29, 37, 50
BstC8I GCNNGC 2 cut(s) 166, 187
BstF5I GGATG 2 cut(s) 90, 179
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 90, 179
Cac8I GCNNGC 2 cut(s) 166, 187
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 88
CviAII CATG 3 cut(s) 127, 186, 274
CviJI RGCY 9 cut(s) 17, 23, 42, 69, 79, 134, 164, 168, 224
CviKI_1 RGCY 9 cut(s) 17, 23, 42, 69, 79, 134, 164, 168, 224
CviQI GTAC 1 cut(s) 88
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 3 cut(s) 130, 189, 277
FaiI YATR 5 cut(s) 10, 128, 187, 271, 275
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 126, 185, 273
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 77, 166
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 3 cut(s) 130, 189, 277
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 1 cut(s) 198
Hpy188III TCNNGA 2 cut(s) 117, 245
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 4, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 130, 189, 277
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 139, 161
LpnPI CCDG 8 cut(s) 61, 73, 98, 144, 150, 150, 171, 258
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 18
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MluCI AATT 3 cut(s) 103, 109, 120
MnlI CCTC 1 cut(s) 180
MseI TTAA 3 cut(s) 30, 38, 51
MslI CAYNNNNRTG 1 cut(s) 184
MspCI CTTAAG 3 cut(s) 29, 37, 50
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 253
NlaIII CATG 3 cut(s) 130, 189, 277
NspI RCATGY 1 cut(s) 189
PaeI GCATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspPI GGNCC 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 3 cut(s) 30, 38, 51
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 159
SetI ASST 8 cut(s) 19, 25, 36, 100, 136, 166, 226, 269
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 3 cut(s) 29, 37, 50
SmoI CTYRAG 3 cut(s) 29, 37, 50
SphI GCATGC 1 cut(s) 189
Sse9I AATT 3 cut(s) 103, 109, 120
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 2 cut(s) 118, 252
TasI AATT 3 cut(s) 103, 109, 120
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 30, 38, 51
Tru9I TTAA 3 cut(s) 30, 38, 51
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 227
Vha464I CTTAAG 3 cut(s) 29, 37, 50
XceI RCATGY 1 cut(s) 189
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.