Rh5AG357500

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005531
Physical Location & Seq
Reverse (-)
59487825 .. 59489570
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG357500.1

Sequence Viewer

Length: 657 bp
ATGGAGATGGTCAAGAGTGCGATGGCGGTGGTGCTAGTTTTGGTGGCGATGGTGCCGAGTCTGGAGGCGATTGAATCGCCGCAGTACACGGTGGTGCACTGGGAATCGGAGTTTGAGATAAGAGAATACAGAGCCGGCGCGTGGATGTCTGCTCATGTTAAAGACATCTCCTTTGAAAAGGCCACCAGAAATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCCAATTTGAATTACTCTCGAATTGCAATGACGGCTCCTGTGCTGACAAGCATAGTCCCTGGAGCCGGCCCGCTGCACTCATCCGCATACTTTGTGAGTTTCTATTTGCCAGTGAAGTTTCAAGCTTCCCCACCCACACCACTCCCGGAACTCAACTTGAAACCTTATACATGGGACAGTCATTACATTGCGGTCAGGAAATTCTCGGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTCGCCACCAGCCTTAGCAGGTCACCATGGGCTAACTCTACGTCAGAAGAAAGTAGCTATGCTTACTCGATTGCACAGTATAACTCCCCATTCCAGTGGGTTGGGCGTGTGAATGAAGTTTGGGTCGATGTCAATGCCTCTGGATTAGAGGGAGATAAAGGCAGTGAAATAGCTACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

218

Amino Acids

24.37

Weight (kDa)

5.96

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 24 - 200 2e-54 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 52, 224
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 26, 80, 296, 309, 416
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 2 cut(s) 86, 215
AfiI CCNNNNNNNGG 2 cut(s) 141, 290
AgsI TTSAA 5 cut(s) 74, 176, 235, 347, 385
AjnI CCWGG 1 cut(s) 283
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 3 cut(s) 350, 531, 647
AluI AGCT 3 cut(s) 350, 531, 647
Alw21I GWGCWC 1 cut(s) 99
Alw44I GTGCAC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 2 cut(s) 180, 292
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 2 cut(s) 52, 224
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 285
BccI CCATC 2 cut(s) 16, 43
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 1 cut(s) 371
BfaI CTAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 483
BisI GCNGC 2 cut(s) 80, 299
BlsI GCNGC 2 cut(s) 81, 300
Bme1390I CCNGG 2 cut(s) 285, 371
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 4 cut(s) 54, 226, 261, 289
BmrFI CCNGG 2 cut(s) 285, 371
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 2 cut(s) 83, 306
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 220, 283, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 290
Bse118I RCCGGY 2 cut(s) 134, 290
Bse1I ACTGG 4 cut(s) 104, 211, 335, 568
Bse3DI GCAATG 2 cut(s) 258, 411
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 220, 283, 500
BseGI GGATG 3 cut(s) 150, 216, 305
BseLI CCNNNNNNNGG 2 cut(s) 141, 290
BseMI GCAATG 2 cut(s) 258, 411
BseNI ACTGG 4 cut(s) 104, 211, 335, 568
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 182, 294
BshNI GGYRCC 2 cut(s) 52, 224
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 3 cut(s) 135, 291, 371
BslFI GGGAC 2 cut(s) 266, 413
BslI CCNNNNNNNGG 2 cut(s) 141, 290
BsmFI GGGAC 2 cut(s) 266, 413
BsnI GGCC 2 cut(s) 182, 294
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 5 cut(s) 26, 80, 296, 309, 416
BspANI GGCC 2 cut(s) 182, 294
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 4 cut(s) 54, 226, 261, 289
BspMI ACCTGC 1 cut(s) 483
BspT107I GGYRCC 2 cut(s) 52, 224
BsrDI GCAATG 2 cut(s) 258, 411
BsrFI RCCGGY 2 cut(s) 134, 290
BsrI ACTGG 4 cut(s) 104, 211, 335, 568
BssAI RCCGGY 2 cut(s) 134, 290
BssECI CCNNGG 3 cut(s) 220, 283, 500
BssT1I CCWWGG 2 cut(s) 220, 500
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 91, 404, 552
BstC8I GCNNGC 3 cut(s) 136, 292, 296
BstDEI CTNAG 1 cut(s) 488
BstDSI CCRYGG 1 cut(s) 500
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 3 cut(s) 150, 216, 305
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 285
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 283, 369
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 285
BstXI CCANNNNNNTGG 2 cut(s) 570, 575
BsuRI GGCC 2 cut(s) 182, 294
BtgI CCRYGG 1 cut(s) 500
BtgZI GCGATG 2 cut(s) 35, 62
BtsCI GGATG 3 cut(s) 150, 216, 305
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 4 cut(s) 97, 342, 575, 643
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 3 cut(s) 136, 292, 296
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 2 cut(s) 134, 290
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 85, 214
CviAII CATG 3 cut(s) 155, 396, 501
CviQI GTAC 2 cut(s) 85, 214
DdeI CTNAG 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 220, 500
Eco88I CYCGRG 1 cut(s) 430
Eco91I GGTNACC 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 220, 500
ErhI CCWWGG 2 cut(s) 220, 500
FaeI CATG 3 cut(s) 158, 399, 504
FaiI YATR 8 cut(s) 156, 278, 313, 393, 397, 502, 534, 555
FaqI GGGAC 2 cut(s) 266, 413
FatI CATG 3 cut(s) 154, 395, 500
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 80, 299
FokI GGATG 3 cut(s) 157, 203, 292
Fsp4HI GCNGC 2 cut(s) 80, 299
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 80, 299
GsuI CTGGAG 2 cut(s) 83, 306
HaeIII GGCC 2 cut(s) 182, 294
HapII CCGG 3 cut(s) 135, 291, 371
HhaI GCGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 158, 399, 504
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 3 cut(s) 58, 74, 104
HpaII CCGG 3 cut(s) 135, 291, 371
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 87, 97
Hpy188I TCNGA 2 cut(s) 109, 520
Hpy188III TCNNGA 6 cut(s) 13, 62, 243, 421, 432, 615
Hpy8I GTNNAC 2 cut(s) 87, 97
HpyCH4III ACNGT 3 cut(s) 91, 404, 552
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 6 cut(s) 97, 251, 301, 440, 460, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 3 cut(s) 158, 399, 504
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 2 cut(s) 134, 290
KroNI GCCGGC 2 cut(s) 136, 292
LmnI GCTCC 2 cut(s) 265, 287
Lsp1109I GCAGC 1 cut(s) 285
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 2 cut(s) 449, 495
MboII GAAGA 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 4 cut(s) 229, 235, 246, 425
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 3 cut(s) 58, 616, 622
MroNI GCCGGC 2 cut(s) 134, 290
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 2 cut(s) 92, 568
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 3 cut(s) 135, 291, 371
MspR9I CCNGG 2 cut(s) 285, 371
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 257
NaeI GCCGGC 2 cut(s) 136, 292
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 500
NgoMIV GCCGGC 2 cut(s) 134, 290
NlaIII CATG 3 cut(s) 158, 399, 504
NlaIV GGNNCC 4 cut(s) 54, 226, 261, 289
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 92
PdiI GCCGGC 2 cut(s) 136, 292
PfeI GAWTC 2 cut(s) 74, 104
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 2 cut(s) 81, 300
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 283
PspEI GGTNACC 1 cut(s) 495
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 54, 226, 261, 289
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 2 cut(s) 86, 215
RsaNI GTAC 2 cut(s) 85, 214
RseI CAYNNNNRTG 2 cut(s) 92, 568
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 80, 299
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 285, 371
SduI GDGCHC 1 cut(s) 99
SetI ASST 8 cut(s) 226, 352, 391, 497, 518, 533, 649, 653
SmiMI CAYNNNNRTG 2 cut(s) 92, 568
Sse9I AATT 4 cut(s) 229, 235, 246, 425
SsiI CCGC 5 cut(s) 26, 80, 296, 309, 416
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 283, 369
StyI CCWWGG 2 cut(s) 220, 500
TaaI ACNGT 3 cut(s) 91, 404, 552
TaiI ACGT 1 cut(s) 518
TaqI TCGA 3 cut(s) 244, 542, 600
TasI AATT 4 cut(s) 229, 235, 246, 425
TatI WGTACW 2 cut(s) 84, 213
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 2 cut(s) 74, 104
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 4 cut(s) 104, 342, 575, 643
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 1 cut(s) 603
TspRI CASTG 4 cut(s) 104, 342, 575, 643
VneI GTGCAC 1 cut(s) 95
XapI RAATTY 1 cut(s) 425
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.