Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000704.1

Orthogroup ID

OG0005531

Physical Location & Seq

Genomic Coordinates Reverse (-)

45589 .. 47889

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000704.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgaccgttgggggttccaacagtcagcaagggacagaacagatggcgggccccacatctgcagatgaaaaagcagctcaccttctctctccagcgccgtggctcgcgtgcttcttcctcccttcagctggcgcgcgcgtctgcgttactttctcttctcagcgcgttcgttcatcttttgggctgagacagcaagtgggctggtccccatctacagtgaccgagtcctggtcttggaaaagtctcaaatatgagacttcaaatggccccaagtcttatatttataagaccagatccaccaaaaagccatggttggagatgaaaagtcttataattggccaaaatctagtttggcaccccatggttggagttgccattccaagaccaagactcggatactgttcatggggcccaacaaatgggctgttccaatacatccaaggtgccaatttgaattgctctcgaattggcatgacagcccctgtgctgacaagaattgtccctagagctggccctctacactcatccgcatactttgtgagattctatttgcgagtgaagtttcaagcttccccacccacacccctcccggaactcaacttgaaaccttatacatgggacagtcagaaaattctcgggattggcaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

217

Amino Acids

24.08

Weight (kDa)

10.18

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29560
malus_domestica	MD11G1160600.v1.1
prunus_persica	Prupe.6G124100_v2.0.a1
pyrus_communis	pycom11g13130
rosa_chinensis	RchiOBHm_Chr3g0465721 RchiOBHm_Chr3g0465771 RchiOBHm_Chr5g0054621 RchiOBHm_Chr6g0271841
rosa_laevigata	RLG00000014360 RLG00000034940
rosa_multiflora	Rmu_sc0000704.1_g000008 Rmu_sc0019242.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026340
rosa_rugosa	Rorug05G0287100
rosa_samantha	Rh3BG143900 Rh3CG145300 Rh3CG145600 Rh3DG145500 Rh5AG357500 Rh5BG369600 Rh5BG522400 Rh5CG392200 Rh5CG546400 Rh5DG383200 Rh6AG405800 Rh6BG216900
rosa_wichuraiana	Rw5G033570 Rw5G033780 Rw6G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	285, 332
AccB1I	GGYRCC	2 cut(s)	354, 443
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccII	CGCG	5 cut(s)	107, 134, 136, 138, 165
AciI	CCGC	2 cut(s)	47, 528
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	7 cut(s)	128, 228, 234, 365, 392, 419, 509
AgsI	TTSAA	4 cut(s)	261, 454, 566, 604
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	77, 128, 509, 569
AluI	AGCT	4 cut(s)	77, 128, 509, 569
Alw26I	GTCTC	3 cut(s)	181, 248, 248
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	5 cut(s)	49, 265, 337, 409, 511
ApaI	GGGCCC	2 cut(s)	53, 413
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	630
AspLEI	GCGC	5 cut(s)	97, 134, 136, 138, 165
AspS9I	GGNCC	7 cut(s)	49, 50, 204, 266, 409, 410, 512
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	2 cut(s)	53, 413
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	2 cut(s)	354, 443
BanII	GRGCYC	2 cut(s)	53, 413
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	37, 217
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	389
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	3 cut(s)	181, 248, 248
BfaI	CTAG	2 cut(s)	347, 504
BfmI	CTRYAG	2 cut(s)	60, 213
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	229, 590
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	7 cut(s)	49, 50, 204, 266, 409, 410, 512
BmiI	GGNNCC	9 cut(s)	16, 51, 52, 206, 268, 356, 410, 411, 445
BmrFI	CCNGG	2 cut(s)	229, 590
BpmI	CTGGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	4 cut(s)	98, 308, 360, 439
Bsc4I	CCNNNNNNNGG	7 cut(s)	128, 228, 234, 365, 392, 419, 509
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	4 cut(s)	98, 308, 360, 439
BseGI	GGATG	2 cut(s)	435, 524
BseLI	CCNNNNNNNGG	7 cut(s)	128, 228, 234, 365, 392, 419, 509
BseMII	CTCAG	2 cut(s)	173, 176
BsePI	GCGCGC	2 cut(s)	132, 134
BseSI	GKGCMC	2 cut(s)	53, 413
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	5 cut(s)	107, 134, 136, 138, 165
BshFI	GGCC	5 cut(s)	51, 267, 339, 411, 513
BshNI	GGYRCC	2 cut(s)	354, 443
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	4 cut(s)	46, 190, 485, 632
BslI	CCNNNNNNNGG	7 cut(s)	128, 228, 234, 365, 392, 419, 509
BsmAI	GTCTC	3 cut(s)	181, 248, 248
BsmFI	GGGAC	4 cut(s)	46, 190, 485, 632
BsnI	GGCC	5 cut(s)	51, 267, 339, 411, 513
BsoBI	CYCGRG	1 cut(s)	635
Bsp120I	GGGCCC	2 cut(s)	49, 409
Bsp1286I	GDGCHC	2 cut(s)	53, 413
Bsp143I	GATC	1 cut(s)	293
Bsp19I	CCATGG	2 cut(s)	308, 360
BspACI	CCGC	2 cut(s)	47, 528
BspANI	GGCC	5 cut(s)	51, 267, 339, 411, 513
BspCNI	CTCAG	2 cut(s)	172, 177
BspFNI	CGCG	5 cut(s)	107, 134, 136, 138, 165
BspLI	GGNNCC	9 cut(s)	16, 51, 52, 206, 268, 356, 410, 411, 445
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	354, 443
BssECI	CCNNGG	4 cut(s)	98, 308, 360, 439
BssHII	GCGCGC	2 cut(s)	132, 134
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	3 cut(s)	308, 360, 439
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	5 cut(s)	7, 23, 217, 401, 623
Bst6I	CTCTTC	1 cut(s)	160
BstC8I	GCNNGC	7 cut(s)	49, 105, 109, 130, 134, 136, 511
BstDEI	CTNAG	2 cut(s)	159, 185
BstDSI	CCRYGG	3 cut(s)	98, 308, 360
BstF5I	GGATG	2 cut(s)	435, 524
BstFNI	CGCG	5 cut(s)	107, 134, 136, 138, 165
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	5 cut(s)	97, 134, 136, 138, 165
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	3 cut(s)	181, 248, 248
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	227, 588
BstSFI	CTRYAG	2 cut(s)	60, 213
BstSLI	GKGCMC	2 cut(s)	53, 413
BstUI	CGCG	5 cut(s)	107, 134, 136, 138, 165
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	5 cut(s)	51, 267, 339, 411, 513
BtgI	CCRYGG	3 cut(s)	98, 308, 360
BtsCI	GGATG	2 cut(s)	435, 524
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	7 cut(s)	49, 105, 109, 130, 134, 136, 511
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	5 cut(s)	97, 134, 136, 138, 165
Cfr13I	GGNCC	7 cut(s)	49, 50, 204, 266, 409, 410, 512
CseI	GACGC	1 cut(s)	127
CviAII	CATG	5 cut(s)	309, 361, 405, 472, 615
DdeI	CTNAG	2 cut(s)	159, 185
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	308, 360, 439
Eco24I	GRGCYC	2 cut(s)	53, 413
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	2 cut(s)	50, 409
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	3 cut(s)	308, 360, 439
EcoT38I	GRGCYC	2 cut(s)	53, 413
ErhI	CCWWGG	3 cut(s)	308, 360, 439
FaeI	CATG	5 cut(s)	312, 364, 408, 475, 618
FaqI	GGGAC	4 cut(s)	46, 190, 485, 632
FatI	CATG	5 cut(s)	308, 360, 404, 471, 614
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	422, 511
FriOI	GRGCYC	2 cut(s)	53, 413
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	347, 504
GlaI	GCGC	5 cut(s)	96, 133, 135, 137, 164
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	51, 267, 339, 411, 513
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	5 cut(s)	97, 134, 136, 138, 165
Hin1II	CATG	5 cut(s)	312, 364, 408, 475, 618
Hin6I	GCGC	5 cut(s)	95, 132, 134, 136, 163
HinP1I	GCGC	5 cut(s)	95, 132, 134, 136, 163
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	3 cut(s)	224, 390, 543
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	395, 627
Hpy188III	TCNNGA	2 cut(s)	462, 637
HpyAV	CCTTC	2 cut(s)	92, 132
HpyCH4III	ACNGT	5 cut(s)	7, 23, 217, 401, 623
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	2 cut(s)	159, 185
Hsp92II	CATG	5 cut(s)	312, 364, 408, 475, 618
HspAI	GCGC	5 cut(s)	95, 132, 134, 136, 163
Kzo9I	GATC	1 cut(s)	293
LpnPI	CCDG	9 cut(s)	105, 114, 187, 214, 241, 304, 495, 495, 603
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	2 cut(s)	347, 504
MaeIII	GTNAC	2 cut(s)	145, 217
MalI	GATC	1 cut(s)	295
MauBI	CGCGCGCG	1 cut(s)	134
MboI	GATC	1 cut(s)	293
MboII	GAAGA	2 cut(s)	106, 147
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	53, 413
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	6 cut(s)	333, 448, 454, 465, 495, 630
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	233, 384
MmeI	TCCRAC	3 cut(s)	42, 294, 346
MnlI	CCTC	3 cut(s)	128, 525, 596
Mox20I	TGGCCA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	229, 590
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	5 cut(s)	107, 134, 136, 138, 165
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	2 cut(s)	308, 360
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	5 cut(s)	312, 364, 408, 475, 618
NlaIV	GGNNCC	9 cut(s)	16, 51, 52, 206, 268, 356, 410, 411, 445
NmuCI	GTSAC	1 cut(s)	217
PauI	GCGCGC	2 cut(s)	132, 134
PfeI	GAWTC	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	232, 384
PpsI	GAGTC	2 cut(s)	232, 384
PsiI	TTATAA	2 cut(s)	285, 332
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	9 cut(s)	16, 51, 52, 206, 268, 356, 410, 411, 445
PspOMI	GGGCCC	2 cut(s)	49, 409
PspPI	GGNCC	7 cut(s)	49, 50, 204, 266, 409, 410, 512
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	223
PteI	GCGCGC	2 cut(s)	132, 134
PvuII	CAGCTG	1 cut(s)	128
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	7 cut(s)	49, 50, 204, 266, 409, 410, 512
SchI	GAGTC	2 cut(s)	233, 384
ScrFI	CCNGG	2 cut(s)	229, 590
SduI	GDGCHC	2 cut(s)	53, 413
SetI	ASST	7 cut(s)	79, 84, 130, 445, 511, 571, 610
SfcI	CTRYAG	2 cut(s)	60, 213
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	6 cut(s)	333, 448, 454, 465, 495, 630
SsiI	CCGC	2 cut(s)	47, 528
SspMI	CTAG	2 cut(s)	347, 504
StyD4I	CCNGG	2 cut(s)	227, 588
StyI	CCWWGG	3 cut(s)	308, 360, 439
TaaI	ACNGT	5 cut(s)	7, 23, 217, 401, 623
TaqI	TCGA	1 cut(s)	463
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	6 cut(s)	333, 448, 454, 465, 495, 630
TfiI	GAWTC	1 cut(s)	543
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	81, 162, 335, 393
TspRI	CASTG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	630
XspI	CTAG	2 cut(s)	347, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.