Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005531

Physical Location & Seq

Genomic Coordinates Reverse (-)

12328798 .. 12330579

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGATTCCAAGTTCGTCGTCAATGGCGCTTCTACTACTACCCATCTTCATCCTCCCAAACTTTTTCTGCCTATGCAGCGCGATCGAGTCGCCTCAGTACTCCGTGGTTCACTCGGAATCCGACTTCGAGATCAGACTCTACAGACTAACCCCCTGGATGTCTGCTCCTGTTACGGACATCTCCTTCGAGAAAGCCACCAAAAATGGCTTCCACAGACTGTTCCAGTACATCCAAGGTGCCAATTTGAACTTCTCTCGGATTGCAATGACAGCGCCTGTTTTGACAAGCATAGTCCCGGGAGCTGGCCCCCTTCACTCGTCGGCCTATTTTGTCAGATTCTACTTGCCTACGAAGTTCCAAAGTACCCCTCCCACACCCCTCCCCGAACTCAACTTGAAATCCTACACATGGGACAGTCATTACATTGCCGTCAGGAAGTTCTCTGGGTTCGCAAGAGATACTAACATTGTGAAAGAGGCAGAGAAACTCGCCACCAGCTTGAGCAGGTCTCCATGGGCAAACTCTACATCAGCAGAAAGTAGCTACGCTTACTCGATTGCACAGTACAACTCCCCATTCCGATTTATTGGTCGTGTGAATGAAGTTTGGGTTGATGTCAATGCATCTGGAGTGGATGGCTATAAATCCAGCGAAATAGCTACATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

224

Amino Acids

24.97

Weight (kDa)

7.76

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29560
malus_domestica	MD11G1160600.v1.1
prunus_persica	Prupe.6G124100_v2.0.a1
pyrus_communis	pycom11g13130
rosa_chinensis	RchiOBHm_Chr3g0465721 RchiOBHm_Chr3g0465771 RchiOBHm_Chr5g0054621 RchiOBHm_Chr6g0271841
rosa_laevigata	RLG00000014360 RLG00000034940
rosa_multiflora	Rmu_sc0000704.1_g000008 Rmu_sc0019242.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026340
rosa_rugosa	Rorug05G0287100
rosa_samantha	Rh3BG143900 Rh3CG145300 Rh3CG145600 Rh3DG145500 Rh5AG357500 Rh5BG369600 Rh5BG522400 Rh5CG392200 Rh5CG546400 Rh5DG383200 Rh6AG405800 Rh6BG216900
rosa_wichuraiana	Rw5G033570 Rw5G033780 Rw6G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	239
AccII	CGCG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	101, 230, 367, 569
AfiI	CCNNNNNNNGG	2 cut(s)	305, 411
AgsI	TTSAA	2 cut(s)	250, 400
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 236, 268
AluBI	AGCT	4 cut(s)	305, 501, 546, 662
AluI	AGCT	4 cut(s)	305, 501, 546, 662
Alw26I	GTCTC	1 cut(s)	516
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	307, 324
ApeKI	GCWGC	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	3 cut(s)	31, 83, 277
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	299, 300
AvaI	CYCGRG	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	53, 632
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	299, 300
BcoDI	GTCTC	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	2 cut(s)	32, 278
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	157, 299, 300
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	241, 310
BmrFI	CCNGG	3 cut(s)	157, 299, 300
BmsI	GCATC	1 cut(s)	635
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
BpmI	CTGGAG	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	523
BpuMI	CCSGG	2 cut(s)	299, 300
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	5 cut(s)	105, 155, 235, 298, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 411
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	2 cut(s)	273, 426
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	5 cut(s)	105, 155, 235, 298, 515
BseGI	GGATG	4 cut(s)	51, 165, 231, 643
BseLI	CCNNNNNNNGG	2 cut(s)	305, 411
BseMI	GCAATG	2 cut(s)	273, 426
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	309, 326
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	281, 428
BslI	CCNNNNNNNGG	2 cut(s)	305, 411
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	2 cut(s)	281, 428
BsnI	GGCC	2 cut(s)	309, 326
Bso31I	GGTCTC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	84, 132
Bsp19I	CCATGG	1 cut(s)	515
BspANI	GGCC	2 cut(s)	309, 326
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	241, 310
BspMI	ACCTGC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	273, 426
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	5 cut(s)	105, 155, 235, 298, 515
BssMI	GATC	2 cut(s)	84, 132
BssT1I	CCWWGG	2 cut(s)	235, 515
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	3 cut(s)	222, 419, 567
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	2 cut(s)	105, 515
BstF5I	GGATG	4 cut(s)	51, 165, 231, 643
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	2 cut(s)	32, 278
BstHHI	GCGC	3 cut(s)	31, 83, 277
BstKTI	GATC	2 cut(s)	87, 135
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	2 cut(s)	84, 132
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 272
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	155, 297, 298
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	309, 326
BtgI	CCRYGG	2 cut(s)	105, 515
BtsCI	GGATG	4 cut(s)	51, 165, 231, 643
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	3 cut(s)	31, 83, 277
Cfr13I	GGNCC	1 cut(s)	308
Cfr9I	CCCGGG	1 cut(s)	298
Csp6I	GTAC	4 cut(s)	100, 229, 366, 568
CviAII	CATG	2 cut(s)	411, 516
CviJI	RGCY	9 cut(s)	197, 210, 305, 309, 326, 501, 546, 642, 662
CviKI_1	RGCY	9 cut(s)	197, 210, 305, 309, 326, 501, 546, 642, 662
CviQI	GTAC	4 cut(s)	100, 229, 366, 568
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	86, 134
DpnII	GATC	2 cut(s)	84, 132
Eco130I	CCWWGG	2 cut(s)	235, 515
Eco31I	GGTCTC	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	235, 515
EcoT22I	ATGCAT	1 cut(s)	628
ErhI	CCWWGG	2 cut(s)	235, 515
FaeI	CATG	2 cut(s)	414, 519
FaiI	YATR	6 cut(s)	76, 293, 412, 517, 645, 667
FaqI	GGGAC	2 cut(s)	281, 428
FatI	CATG	2 cut(s)	410, 515
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	4 cut(s)	38, 172, 218, 650
Fsp4HI	GCNGC	1 cut(s)	79
GlaI	GCGC	3 cut(s)	30, 82, 276
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	2 cut(s)	32, 278
HaeIII	GGCC	2 cut(s)	309, 326
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	3 cut(s)	31, 83, 277
Hin1II	CATG	2 cut(s)	414, 519
Hin6I	GCGC	3 cut(s)	29, 81, 275
HinP1I	GCGC	3 cut(s)	29, 81, 275
HinfI	GANTC	5 cut(s)	7, 89, 119, 138, 339
HpaII	CCGG	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	6 cut(s)	118, 124, 137, 261, 338, 584
Hpy188III	TCNNGA	4 cut(s)	130, 190, 436, 630
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	22, 325
HpyAV	CCTTC	2 cut(s)	196, 323
HpyCH4III	ACNGT	3 cut(s)	222, 419, 567
HpyCH4V	TGCA	4 cut(s)	78, 266, 563, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 272
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	414, 519
HspAI	GCGC	3 cut(s)	29, 81, 275
Kzo9I	GATC	2 cut(s)	84, 132
LmnI	GCTCC	2 cut(s)	172, 302
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	635
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	86, 134
MboI	GATC	2 cut(s)	84, 132
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	2 cut(s)	98, 132
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	65, 105, 381, 392, 472
Mph1103I	ATGCAT	1 cut(s)	628
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	3 cut(s)	157, 299, 300
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	78, 272
NciI	CCSGG	2 cut(s)	299, 300
NcoI	CCATGG	1 cut(s)	515
NdeII	GATC	2 cut(s)	84, 132
NlaIII	CATG	2 cut(s)	414, 519
NlaIV	GGNNCC	2 cut(s)	241, 310
NsiI	ATGCAT	1 cut(s)	628
PfeI	GAWTC	3 cut(s)	7, 119, 339
PkrI	GCNGC	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	97, 132
PpsI	GAGTC	2 cut(s)	97, 132
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	241, 310
PspPI	GGNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	4 cut(s)	101, 230, 367, 569
RsaNI	GTAC	4 cut(s)	100, 229, 366, 568
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	84, 132
Sau96I	GGNCC	1 cut(s)	308
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	2 cut(s)	98, 132
ScrFI	CCNGG	3 cut(s)	157, 299, 300
SetI	ASST	6 cut(s)	241, 307, 503, 512, 548, 664
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	1 cut(s)	142
SmaI	CCCGGG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	155, 297, 298
StyI	CCWWGG	2 cut(s)	235, 515
TaaI	ACNGT	3 cut(s)	222, 419, 567
TaqI	TCGA	4 cut(s)	87, 129, 189, 557
TasI	AATT	1 cut(s)	244
TatI	WGTACW	3 cut(s)	99, 228, 567
TfiI	GAWTC	3 cut(s)	7, 119, 339
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	40, 618
TspGWI	ACGGA	2 cut(s)	94, 191
TspMI	CCCGGG	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	298
ZrmI	AGTACT	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.