Rh3CG145300

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005531
Physical Location & Seq
Forward (+)
12075513 .. 12075902
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG145300.1

Sequence Viewer

Length: 390 bp
ATGACAGCTCCTGTGCTGACAAGCATTGTCCCTGGAGCTGGCCCTCTGCACTCATCCGCATGCTTTGTGAGATTCTATTTGCCAATGAAGTTTCAAGCTTCCCCACCCACACCCCTTCCAGAACTCAACTTGAAACCTTATACATGTGATAGTCATTACACTACGGTCAGGAAATTCTCGGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTCGCCACCAGACTTAGCAGGTCTCCATGGGCTAATTCTACATCAGAAGAAAGTAGATCTACTTACTCGATTGCACAGTATAACTCCCCTTTCCGGTTGATTGGGTGTGTGAATGAAGTTTGGGTCGATGTCAATGCCTCTGGATTGCTTTTCGATTCTTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

129

Amino Acids

14.35

Weight (kDa)

8.5

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 1 - 116 6.9e-26 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 38, 315
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 2 cut(s) 95, 133
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 8, 38, 98
AluI AGCT 3 cut(s) 8, 38, 98
Alw26I GTCTC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 231
BglII AGATCT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 31, 248
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 315
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 31, 248
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 2 cut(s) 38, 315
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 38, 315
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 178
Bsp143I GATC 1 cut(s) 278
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 31, 248
BssMI GATC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 166, 300
BstC8I GCNNGC 2 cut(s) 40, 61
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 2 cut(s) 63, 147
BstSCI CCNGG 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 53
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 40, 61
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 3 cut(s) 60, 144, 249
CviJI RGCY 5 cut(s) 8, 38, 42, 98, 254
CviKI_1 RGCY 5 cut(s) 8, 38, 42, 98, 254
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 3 cut(s) 63, 147, 252
FaiI YATR 5 cut(s) 61, 141, 145, 250, 303
FaqI GGGAC 1 cut(s) 14
FatI CATG 3 cut(s) 59, 143, 248
FokI GGATG 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 316
Hin1II CATG 3 cut(s) 63, 147, 252
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 2 cut(s) 72, 377
HpaII CCGG 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 4 cut(s) 119, 169, 180, 363
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 166, 300
HpyCH4V TGCA 4 cut(s) 49, 188, 208, 296
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 3 cut(s) 63, 147, 252
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 13, 35
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 1 cut(s) 281
MflI RGATCY 1 cut(s) 278
MluCI AATT 2 cut(s) 173, 256
MnlI CCTC 2 cut(s) 54, 370
MslI CAYNNNNRTG 1 cut(s) 58
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 278
NlaIII CATG 3 cut(s) 63, 147, 252
NspI RCATGY 2 cut(s) 63, 147
PaeI GCATGC 1 cut(s) 63
PciI ACATGT 1 cut(s) 143
PfeI GAWTC 2 cut(s) 72, 377
PscI ACATGT 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspPI GGNCC 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 58
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 33
SetI ASST 5 cut(s) 10, 40, 100, 139, 245
SmiMI CAYNNNNRTG 1 cut(s) 58
SphI GCATGC 1 cut(s) 63
Sse9I AATT 2 cut(s) 173, 256
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 166, 300
TaqI TCGA 3 cut(s) 290, 348, 375
TasI AATT 2 cut(s) 173, 256
TfiI GAWTC 2 cut(s) 72, 377
TspDTI ATGAA 2 cut(s) 101, 351
XapI RAATTY 1 cut(s) 173
XceI RCATGY 2 cut(s) 63, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.