RLG00000034940

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005531
Physical Location & Seq
Reverse (-)
57398458 .. 57399677
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034940

Sequence Viewer

Length: 657 bp
ATGCAGATGGTCAAGAGTGCGACGGTGGTGGTGCTAGTTTTGGTGGCGATGGTGCCGAGTCTGGAGGCGATTGAATCGCCGCAGTACACGGTGGTGCACTCGGAATCGGAGTTTGAGATCAGAGAATACAGAGTCGGCGCGTGGATGTCTGCTCCTGTTAAAGACATCTCCTTTGAAAAGGCCACCAGAAATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCCAATTTGAATTGCTCTCGAATTGCAATGACGGCTCCTGTGCTGACAAGCATAGTCCCTGGAGCCGGCCCGCTGCACTCATCCGCGTACTTTGTGAGTTTCTATTTGCCAGTGAAGTTTCAAGCTTCCCCACCCACACCACTCCCGGAACTCAACTTGAAACCATATACATGGGACGGTCATTACATTGCAGTCAGGAAATTCTCGGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTCGCCACCAGCCTTAGCAGGTCTCCATGGGCAAACTGTACATCAGAAGAAAGTAGCTATGCTTACTCGATTGCACAGTATAACTCCCCATTCCGGTGGGTTGGGCGTGTGAATGAAGTTTGGGTCGATGTCAATGCCTCTGGATTAGAGGGAGATAAAGGCAGTGAAATAGCTACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

219

Amino Acids

24.21

Weight (kDa)

6.43

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 24 - 200 7.3e-54 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 52, 224
AccII CGCG 2 cut(s) 140, 311
AciI CCGC 3 cut(s) 80, 296, 309
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 4 cut(s) 86, 215, 314, 514
AfiI CCNNNNNNNGG 2 cut(s) 290, 567
AgsI TTSAA 5 cut(s) 74, 176, 235, 347, 385
AjnI CCWGG 1 cut(s) 283
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 3 cut(s) 350, 531, 647
AluI AGCT 3 cut(s) 350, 531, 647
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 2 cut(s) 180, 292
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 2 cut(s) 52, 224
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 483
BisI GCNGC 2 cut(s) 80, 299
BlsI GCNGC 2 cut(s) 81, 300
Bme1390I CCNGG 2 cut(s) 285, 371
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 4 cut(s) 54, 226, 261, 289
BmrFI CCNGG 2 cut(s) 285, 371
BpmI CTGGAG 2 cut(s) 83, 306
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 220, 283, 500
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 567
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 211, 335
Bse3DI GCAATG 2 cut(s) 258, 411
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 220, 283, 500
BseGI GGATG 3 cut(s) 150, 216, 305
BseLI CCNNNNNNNGG 2 cut(s) 290, 567
BseMI GCAATG 2 cut(s) 258, 411
BseNI ACTGG 2 cut(s) 211, 335
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 140, 311
BshFI GGCC 2 cut(s) 182, 294
BshNI GGYRCC 2 cut(s) 52, 224
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 3 cut(s) 291, 371, 568
BslFI GGGAC 2 cut(s) 266, 413
BslI CCNNNNNNNGG 2 cut(s) 290, 567
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 2 cut(s) 266, 413
BsnI GGCC 2 cut(s) 182, 294
Bso31I GGTCTC 1 cut(s) 501
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 512
Bsp143I GATC 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 3 cut(s) 80, 296, 309
BspANI GGCC 2 cut(s) 182, 294
BspFNI CGCG 2 cut(s) 140, 311
BspLI GGNNCC 4 cut(s) 54, 226, 261, 289
BspMI ACCTGC 1 cut(s) 483
BspT107I GGYRCC 2 cut(s) 52, 224
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 258, 411
BsrFI RCCGGY 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 512
BsrI ACTGG 2 cut(s) 211, 335
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 220, 283, 500
BssMI GATC 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 220, 500
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 5 cut(s) 25, 91, 404, 512, 552
BstAUI TGTACA 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 292, 296
BstDEI CTNAG 1 cut(s) 488
BstDSI CCRYGG 1 cut(s) 500
BstF5I GGATG 3 cut(s) 150, 216, 305
BstFNI CGCG 2 cut(s) 140, 311
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 283, 369
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 2 cut(s) 140, 311
BstV1I GCAGC 1 cut(s) 285
BstXI CCANNNNNNTGG 2 cut(s) 396, 570
BsuRI GGCC 2 cut(s) 182, 294
BtgI CCRYGG 1 cut(s) 500
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 3 cut(s) 150, 216, 305
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 342, 643
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 292, 296
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 4 cut(s) 85, 214, 313, 513
CviAII CATG 2 cut(s) 396, 501
CviQI GTAC 4 cut(s) 85, 214, 313, 513
DdeI CTNAG 1 cut(s) 488
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 220, 500
Eco31I GGTCTC 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 220, 500
ErhI CCWWGG 2 cut(s) 220, 500
FaeI CATG 2 cut(s) 399, 504
FaiI YATR 7 cut(s) 278, 391, 393, 397, 502, 534, 555
FaqI GGGAC 2 cut(s) 266, 413
FatI CATG 2 cut(s) 395, 500
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 80, 299
FokI GGATG 3 cut(s) 157, 203, 292
Fsp4HI GCNGC 2 cut(s) 80, 299
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 80, 299
GsuI CTGGAG 2 cut(s) 83, 306
HaeIII GGCC 2 cut(s) 182, 294
HapII CCGG 3 cut(s) 291, 371, 568
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 399, 504
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 4 cut(s) 58, 74, 104, 132
HpaII CCGG 3 cut(s) 291, 371, 568
Hpy166II GTNNAC 2 cut(s) 87, 97
Hpy188I TCNGA 4 cut(s) 103, 109, 122, 520
Hpy188III TCNNGA 6 cut(s) 13, 62, 243, 421, 432, 615
Hpy8I GTNNAC 2 cut(s) 87, 97
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 5 cut(s) 25, 91, 404, 512, 552
HpyCH4V TGCA 8 cut(s) 4, 97, 251, 301, 416, 440, 460, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 488
Hsp92II CATG 2 cut(s) 399, 504
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 117
LmnI GCTCC 3 cut(s) 157, 265, 287
Lsp1109I GCAGC 1 cut(s) 285
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 449
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 4 cut(s) 229, 235, 246, 425
MlyI GAGTC 2 cut(s) 67, 141
MnlI CCTC 3 cut(s) 58, 616, 622
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 3 cut(s) 92, 394, 568
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 3 cut(s) 291, 371, 568
MspR9I CCNGG 2 cut(s) 285, 371
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 140, 311
MwoI GCNNNNNNNGC 1 cut(s) 257
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 500
NdeII GATC 1 cut(s) 117
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 399, 504
NlaIV GGNNCC 4 cut(s) 54, 226, 261, 289
NmeAIII GCCGAG 1 cut(s) 81
OliI CACNNNNGTG 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 74, 104
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 2 cut(s) 81, 300
PleI GAGTC 2 cut(s) 66, 140
PpsI GAGTC 2 cut(s) 66, 140
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 54, 226, 261, 289
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 4 cut(s) 86, 215, 314, 514
RsaNI GTAC 4 cut(s) 85, 214, 313, 513
RseI CAYNNNNRTG 3 cut(s) 92, 394, 568
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 80, 299
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 2 cut(s) 67, 141
ScrFI CCNGG 2 cut(s) 285, 371
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 226, 352, 497, 533, 649, 653
SmiMI CAYNNNNRTG 3 cut(s) 92, 394, 568
Sse9I AATT 4 cut(s) 229, 235, 246, 425
SsiI CCGC 3 cut(s) 80, 296, 309
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 283, 369
StyI CCWWGG 2 cut(s) 220, 500
TaaI ACNGT 5 cut(s) 25, 91, 404, 512, 552
TaqI TCGA 3 cut(s) 244, 542, 600
TasI AATT 4 cut(s) 229, 235, 246, 425
TatI WGTACW 3 cut(s) 84, 213, 512
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 2 cut(s) 74, 104
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 342, 643
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 603
TspRI CASTG 2 cut(s) 342, 643
VneI GTGCAC 1 cut(s) 95
XapI RAATTY 1 cut(s) 425
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.