Rh5CG392200

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005531
Physical Location & Seq
Reverse (-)
51643677 .. 51645215
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG392200.1

Sequence Viewer

Length: 660 bp
ATGGAGATGGTCAAGAGTGCGATGGTGGTGGTGGTGCTAGTTTTGGTGGCGATGGTGCCGAGTCTGGAGGCGATTGAATCGCCGCAGTACACGGTGGTGCACTGGGAGTCGGAGTTTGAGATAAGAGAATACAGAGCCGGCGTGTGGATGTCTGCTCCTGTTAAAGACATCTCCTTTGATAAGGCCACTAGATATGGCTTCCACAGGCTGTTCCAGTACATCCAAGGTGCCAATTTGAATTACTCTCGAATTACAATGACGGCTCCTGTGCTGACAAGCATAGTCCCTGGAGCCGGCCCGCTGCACTCATCCGCATACTTTGTGAGTTTCTATTTGCCAGTGAAGTTTCAAGCTTCCCCACCCACACCACTCCCGGAACTCAACTTGAAACCATATACATGGGACAGTCATTACGTTGCAGTCAGGAAATTCTCGGGATTTGCAAGAGATAGTAACATTGTGCAAGAAGCACAGAAACTGGCCACCAGCCTTAGCAGGTCTCCATGGGCAAACTCTACATCAGAAGAAAGTAGCTATGCTTACTCGATTGCACAGTATAACTCCCCATTCCAGTGGGTTGGGCGTGTGAATGAAGTTTGGGTCGATGTCAATGCCTCTGGAATAGAGGGAGATAAAGGCAGTGAAATAGCTACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

219

Amino Acids

24.54

Weight (kDa)

5.81

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 25 - 201 3.9e-54 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 486
AccB1I GGYRCC 2 cut(s) 55, 227
AciI CCGC 3 cut(s) 83, 299, 312
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 2 cut(s) 89, 218
AfiI CCNNNNNNNGG 2 cut(s) 144, 293
AgsI TTSAA 4 cut(s) 77, 238, 350, 388
AjnI CCWGG 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 3 cut(s) 353, 534, 650
AluI AGCT 3 cut(s) 353, 534, 650
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 504
Alw44I GTGCAC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 478
Ama87I CYCGRG 1 cut(s) 433
AoxI GGCC 3 cut(s) 183, 295, 480
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 482
BanI GGYRCC 2 cut(s) 55, 227
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 16, 46
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 2 cut(s) 38, 189
BfuAI ACCTGC 1 cut(s) 486
BisI GCNGC 2 cut(s) 83, 302
BlsI GCNGC 2 cut(s) 84, 303
Bme1390I CCNGG 2 cut(s) 288, 374
BmeT110I CYCGRG 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 4 cut(s) 57, 229, 264, 292
BmrFI CCNGG 2 cut(s) 288, 374
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 2 cut(s) 86, 309
Bpu10I CCTNAGC 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 223, 286, 503
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 293
Bse118I RCCGGY 2 cut(s) 137, 293
Bse1I ACTGG 5 cut(s) 107, 214, 338, 483, 571
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 223, 286, 503
BseGI GGATG 3 cut(s) 153, 219, 308
BseLI CCNNNNNNNGG 2 cut(s) 144, 293
BseNI ACTGG 5 cut(s) 107, 214, 338, 483, 571
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 1 cut(s) 288
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 3 cut(s) 185, 297, 482
BshNI GGYRCC 2 cut(s) 55, 227
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 3 cut(s) 138, 294, 374
BslFI GGGAC 2 cut(s) 269, 416
BslI CCNNNNNNNGG 2 cut(s) 144, 293
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 2 cut(s) 269, 416
BsnI GGCC 3 cut(s) 185, 297, 482
Bso31I GGTCTC 1 cut(s) 504
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 3 cut(s) 83, 299, 312
BspANI GGCC 3 cut(s) 185, 297, 482
BspLI GGNNCC 4 cut(s) 57, 229, 264, 292
BspMI ACCTGC 1 cut(s) 486
BspT107I GGYRCC 2 cut(s) 55, 227
BspTNI GGTCTC 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 137, 293
BsrI ACTGG 5 cut(s) 107, 214, 338, 483, 571
BssAI RCCGGY 2 cut(s) 137, 293
BssECI CCNNGG 3 cut(s) 223, 286, 503
BssT1I CCWWGG 2 cut(s) 223, 503
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 3 cut(s) 94, 407, 555
BstC8I GCNNGC 3 cut(s) 139, 295, 299
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 153, 219, 308
BstMAI GTCTC 1 cut(s) 504
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 286, 372
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 288
BstXI CCANNNNNNTGG 3 cut(s) 399, 573, 578
BsuRI GGCC 3 cut(s) 185, 297, 482
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 2 cut(s) 35, 65
BtsCI GGATG 3 cut(s) 153, 219, 308
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 4 cut(s) 100, 345, 578, 646
BveI ACCTGC 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 139, 295, 299
CaiI CAGNNNCTG 1 cut(s) 478
Cfr10I RCCGGY 2 cut(s) 137, 293
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 88, 217
CviAII CATG 2 cut(s) 399, 504
CviQI GTAC 2 cut(s) 88, 217
DdeI CTNAG 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 223, 503
Eco31I GGTCTC 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 223, 503
ErhI CCWWGG 2 cut(s) 223, 503
FaeI CATG 2 cut(s) 402, 507
FaiI YATR 9 cut(s) 195, 281, 316, 394, 396, 400, 505, 537, 558
FaqI GGGAC 2 cut(s) 269, 416
FatI CATG 2 cut(s) 398, 503
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 83, 302
FokI GGATG 3 cut(s) 160, 206, 295
Fsp4HI GCNGC 2 cut(s) 83, 302
FspBI CTAG 2 cut(s) 38, 189
GluI GCNGC 2 cut(s) 83, 302
GsuI CTGGAG 2 cut(s) 86, 309
HaeIII GGCC 3 cut(s) 185, 297, 482
HapII CCGG 3 cut(s) 138, 294, 374
Hin1II CATG 2 cut(s) 402, 507
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 3 cut(s) 61, 77, 107
HpaII CCGG 3 cut(s) 138, 294, 374
Hpy166II GTNNAC 2 cut(s) 90, 100
Hpy188I TCNGA 2 cut(s) 112, 523
Hpy188III TCNNGA 6 cut(s) 13, 65, 246, 424, 435, 618
Hpy8I GTNNAC 2 cut(s) 90, 100
HpyCH4III ACNGT 3 cut(s) 94, 407, 555
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 6 cut(s) 100, 304, 419, 443, 463, 551
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 2 cut(s) 402, 507
KroI GCCGGC 2 cut(s) 137, 293
KroNI GCCGGC 2 cut(s) 139, 295
LmnI GCTCC 3 cut(s) 160, 268, 290
Lsp1109I GCAGC 1 cut(s) 288
MaeI CTAG 2 cut(s) 38, 189
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 452
MboII GAAGA 1 cut(s) 536
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 4 cut(s) 232, 238, 249, 428
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 2 cut(s) 70, 116
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 3 cut(s) 61, 619, 625
Mox20I TGGCCA 1 cut(s) 482
MroNI GCCGGC 2 cut(s) 137, 293
MscI TGGCCA 1 cut(s) 482
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 3 cut(s) 95, 397, 571
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 138, 294, 374
MspR9I CCNGG 2 cut(s) 288, 374
MvaI CCWGG 1 cut(s) 288
NaeI GCCGGC 2 cut(s) 139, 295
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 503
NgoMIV GCCGGC 2 cut(s) 137, 293
NlaIII CATG 2 cut(s) 402, 507
NlaIV GGNNCC 4 cut(s) 57, 229, 264, 292
NmeAIII GCCGAG 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 95
PdiI GCCGGC 2 cut(s) 139, 295
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 2 cut(s) 84, 303
PleI GAGTC 2 cut(s) 69, 115
PpsI GAGTC 2 cut(s) 69, 115
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 4 cut(s) 57, 229, 264, 292
PspPI GGNCC 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 478
RsaI GTAC 2 cut(s) 89, 218
RsaNI GTAC 2 cut(s) 88, 217
RseI CAYNNNNRTG 3 cut(s) 95, 397, 571
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 83, 302
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 70, 116
ScrFI CCNGG 2 cut(s) 288, 374
SduI GDGCHC 1 cut(s) 102
SetI ASST 7 cut(s) 229, 355, 417, 500, 536, 652, 656
SmiMI CAYNNNNRTG 3 cut(s) 95, 397, 571
Sse9I AATT 4 cut(s) 232, 238, 249, 428
SsiI CCGC 3 cut(s) 83, 299, 312
SspMI CTAG 2 cut(s) 38, 189
StyD4I CCNGG 2 cut(s) 286, 372
StyI CCWWGG 2 cut(s) 223, 503
TaaI ACNGT 3 cut(s) 94, 407, 555
TaiI ACGT 1 cut(s) 417
TaqI TCGA 3 cut(s) 247, 545, 603
TasI AATT 4 cut(s) 232, 238, 249, 428
TatI WGTACW 2 cut(s) 87, 216
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 4 cut(s) 107, 345, 578, 646
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 4 cut(s) 107, 345, 578, 646
VneI GTGCAC 1 cut(s) 98
XapI RAATTY 1 cut(s) 428
XspI CTAG 2 cut(s) 38, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.