FvH4_3g34110

Haloacid dehalogenase-like hydrolase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
29514273 .. 29517290
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34110.t3

Sequence Viewer

Length: 1152 bp
ATGAGCCTCCAAATCCTGAGAAAGGCTTCTTCACGCACCCAAAACCCGAACCATCTCTCCTCCATTGTCCTTTCCAAACTCACCCGCTCCTTCTCGCAGCTCTCCTCTCAATCCAAACCTTCTTCTTCGTTTGGCATTGCCTTCGACATCGACGGCGTCGTTTTGAGCAGCGATGTCCCCATCGGAGGCTCCCCTCAGGCCTTCAGAAGACTATACGACGATTCTGGTCGTCTCAGGGTTCCCTACGTCTTCTTGACCAATGGAGGTGGGTTTCCTGAGTCTAAAAGAGCACATGAGTTGGGTCAGCTTCTGGGTGTCAAGGTTTCACCTTCACAGGTTTTGCAGGCTCATACACCTTTTAAGCAATTAGTGAGCAAATTTCAGAATGAGCTGATTGTTGCTGTGGGAAAAGGAGAACCTGCTGCTGTGATGTCTGATTACGGGTTTAGAAATGTTGTTTCGATTGATGACTATGCCGCGTGTTTTGAAAACATTGATCCACTCGCACCACATAAGAAGTGGACAACGAAGCATGTTGGTAATCCGGATAGCGCTATCAGAGATCTTGTTCGCAGAGAAAGAGGTCAGGCGGTGTTTATACTTAGTGATCCTGTTGATTGGAGCAGGGACATTCAGGTTCTATGTGACATTTTAAGAACTGGTGGTCTTCCTGGTCGGGAAATTGGACACCAACCTCAACTGTACTTTGCGCATGACGACCTTGCATACCAGGCTGCTTTTCCTTCTGAGCGTTTTGGACTGGGAGCTTTCAGAATTGCATTGGAATCCATCTTTAACAGAGTCCACCCTCATCCTTTGAAGTATACAACTTTTGGGAAGCCAAATTCGTTTGTATTCAAGAATGCAGAATTTGCTCTTAAGCAACTTGTGTCATCTGTTCCTGACAATGTTTCGGTTGCGAATCATGAAACTGCTGGCAGTCATCAGTTCAAAACTCTGTATATGGTAGGAGATAATCCCTTAGTTGACATCAAGGGTGCACGACAGGCGGGTCATCCCTGGTTTTCTATTCTGACAAGGACCGGGGTTTTTAAGGGAAAGGAAAATCATGACAAGTTTCCAGCTGATCTGGTTGTTGATACTGTCGAAGAAGCTGTGGACTATGTTTTGAAAAAGGAGTCGACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

42.29

Weight (kDa)

8.87

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_6 PF13344 46 - 150 2.8e-18 Haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1011
Acc16I TGCGCA 1 cut(s) 711
Acc36I ACCTGC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 87
AccI GTMKAC 2 cut(s) 824, 1142
AccII CGCG 1 cut(s) 479
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 4 cut(s) 85, 477, 590, 1010
AclWI GGATC 2 cut(s) 491, 602
AcsI RAATTY 3 cut(s) 377, 844, 869
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 704
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 22, 185
AflII CTTAAG 1 cut(s) 878
AgsI TTSAA 5 cut(s) 488, 820, 859, 952, 1132
AjnI CCWGG 3 cut(s) 670, 729, 1019
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 6 cut(s) 100, 307, 391, 767, 1085, 1115
AluI AGCT 6 cut(s) 100, 307, 391, 767, 1085, 1115
Alw21I GWGCWC 2 cut(s) 292, 1003
Alw26I GTCTC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 999
AlwI GGATC 2 cut(s) 491, 602
AlwNI CAGNNNCTG 1 cut(s) 310
Aor13HI TCCGGA 1 cut(s) 544
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 1 cut(s) 198
ApaLI GTGCAC 1 cut(s) 999
ApeKI GCWGC 4 cut(s) 97, 168, 422, 734
ApoI RAATTY 3 cut(s) 377, 844, 869
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 2 cut(s) 554, 712
AspS9I GGNCC 1 cut(s) 1041
AsuC2I CCSGG 1 cut(s) 1045
AsuHPI GGTGA 2 cut(s) 73, 318
AvaII GGWCC 1 cut(s) 1041
AxyI CCTNAGG 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 1003
BbsI GAAGAC 3 cut(s) 214, 241, 659
Bbv12I GWGCWC 2 cut(s) 292, 1003
BbvI GCAGC 4 cut(s) 109, 180, 409, 721
BccI CCATC 3 cut(s) 60, 188, 797
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 3 cut(s) 672, 731, 1021
BcnI CCSGG 1 cut(s) 1045
BcoDI GTCTC 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 878
BfuAI ACCTGC 1 cut(s) 427
BglII AGATCT 1 cut(s) 562
BisI GCNGC 5 cut(s) 98, 169, 423, 477, 735
BlsI GCNGC 5 cut(s) 99, 170, 424, 478, 736
Bme1390I CCNGG 4 cut(s) 672, 731, 1021, 1045
Bme18I GGWCC 1 cut(s) 1041
BmgT120I GGNCC 1 cut(s) 1041
BmiI GGNNCC 2 cut(s) 190, 240
BmrFI CCNGG 4 cut(s) 672, 731, 1021, 1045
BmrI ACTGGG 1 cut(s) 770
BmuI ACTGGG 1 cut(s) 770
BpiI GAAGAC 3 cut(s) 214, 241, 659
BplI GAGNNNNNCTC 1 cut(s) 1130
BpuMI CCSGG 1 cut(s) 1045
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 1019, 1044
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 185
Bse1I ACTGG 2 cut(s) 664, 765
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 3 cut(s) 672, 731, 1021
BseDI CCNNGG 2 cut(s) 1019, 1044
BseGI GGATG 2 cut(s) 811, 1015
BseLI CCNNNNNNNGG 2 cut(s) 22, 185
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 5 cut(s) 8, 209, 247, 267, 738
BseNI ACTGG 2 cut(s) 664, 765
BseRI GAGGAG 2 cut(s) 49, 94
BseSI GKGCMC 1 cut(s) 1003
BseXI GCAGC 4 cut(s) 109, 180, 409, 721
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 292, 1003
BsiSI CCGG 2 cut(s) 545, 1044
BslFI GGGAC 2 cut(s) 161, 641
BslI CCNNNNNNNGG 2 cut(s) 22, 185
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 161, 641
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 292, 1003
Bsp13I TCCGGA 1 cut(s) 544
Bsp143I GATC 4 cut(s) 496, 562, 607, 1087
BspACI CCGC 4 cut(s) 85, 477, 590, 1010
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 5 cut(s) 9, 208, 246, 268, 739
BspEI TCCGGA 1 cut(s) 544
BspFNI CGCG 1 cut(s) 479
BspHI TCATGA 2 cut(s) 925, 1069
BspLI GGNNCC 2 cut(s) 190, 240
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 2 cut(s) 491, 602
BspTI CTTAAG 1 cut(s) 878
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 2 cut(s) 664, 765
BssECI CCNNGG 2 cut(s) 1019, 1044
BssMI GATC 4 cut(s) 496, 562, 607, 1087
BssNAI GTATAC 1 cut(s) 825
BssNI GRCGYC 1 cut(s) 156
Bst1107I GTATAC 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 672, 731, 1021
Bst4CI ACNGT 2 cut(s) 702, 1105
BstACI GRCGYC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 878
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 2 cut(s) 345, 937
BstDEI CTNAG 8 cut(s) 17, 195, 233, 276, 602, 747, 982, 1149
BstENI CCTNNNNNAGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 811, 1015
BstFNI CGCG 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 554, 712
BstKTI GATC 4 cut(s) 499, 565, 610, 1090
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 4 cut(s) 496, 562, 607, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 731, 872, 1007
BstNI CCWGG 3 cut(s) 672, 731, 1021
BstNSI RCATGY 1 cut(s) 536
BstSCI CCNGG 4 cut(s) 670, 729, 1019, 1043
BstSLI GKGCMC 1 cut(s) 1003
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 4 cut(s) 109, 180, 409, 721
BstV2I GAAGAC 3 cut(s) 214, 241, 659
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 825
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 200
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 811, 1015
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 345, 937
CaiI CAGNNNCTG 1 cut(s) 310
CciI TCATGA 2 cut(s) 925, 1069
CfoI GCGC 2 cut(s) 554, 712
Cfr13I GGNCC 1 cut(s) 1041
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 703
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 5 cut(s) 293, 533, 713, 926, 1070
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 8 cut(s) 17, 195, 233, 276, 602, 747, 982, 1149
DpnI GATC 4 cut(s) 498, 564, 609, 1089
DpnII GATC 4 cut(s) 496, 562, 607, 1087
DrdI GACNNNNNNGTC 1 cut(s) 1011
DseDI GACNNNNNNGTC 1 cut(s) 1011
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 1041
Eco47III AGCGCT 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 670, 729, 1019
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 5 cut(s) 296, 536, 716, 929, 1073
FaqI GGGAC 2 cut(s) 161, 641
FatI CATG 5 cut(s) 292, 532, 712, 925, 1069
FauI CCCGC 2 cut(s) 92, 1003
FblI GTMKAC 2 cut(s) 824, 1142
Fnu4HI GCNGC 5 cut(s) 98, 169, 423, 477, 735
FokI GGATG 2 cut(s) 798, 1002
Fsp4HI GCNGC 5 cut(s) 98, 169, 423, 477, 735
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 2 cut(s) 553, 711
GluI GCNGC 5 cut(s) 98, 169, 423, 477, 735
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 1 cut(s) 200
HapII CCGG 2 cut(s) 545, 1044
HgaI GACGC 1 cut(s) 145
HhaI GCGC 2 cut(s) 554, 712
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 5 cut(s) 296, 536, 716, 929, 1073
Hin6I GCGC 2 cut(s) 552, 710
HinP1I GCGC 2 cut(s) 552, 710
HincII GTYRAC 2 cut(s) 988, 1143
HindII GTYRAC 2 cut(s) 988, 1143
HinfI GANTC 6 cut(s) 221, 278, 785, 801, 922, 1139
HpaII CCGG 2 cut(s) 545, 1044
HphI GGTGA 2 cut(s) 73, 318
Hpy166II GTNNAC 7 cut(s) 522, 805, 825, 988, 1001, 1120, 1143
Hpy188I TCNGA 8 cut(s) 185, 206, 384, 436, 560, 748, 773, 1035
Hpy188III TCNNGA 9 cut(s) 16, 253, 275, 545, 677, 859, 902, 926, 1070
Hpy8I GTNNAC 7 cut(s) 522, 805, 825, 988, 1001, 1120, 1143
Hpy99I CGWCG 3 cut(s) 155, 161, 221
HpyAV CCTTC 6 cut(s) 100, 129, 151, 211, 339, 753
HpyCH4III ACNGT 2 cut(s) 702, 1105
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 5 cut(s) 343, 725, 779, 866, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 731, 872, 1007
HpyF3I CTNAG 8 cut(s) 17, 195, 233, 276, 602, 747, 982, 1149
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 5 cut(s) 296, 536, 716, 929, 1073
HspAI GCGC 2 cut(s) 552, 710
Kpn2I TCCGGA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 496, 562, 607, 1087
LmnI GCTCC 4 cut(s) 92, 194, 621, 764
Lsp1109I GCAGC 4 cut(s) 109, 180, 409, 721
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 644
MalI GATC 4 cut(s) 498, 564, 609, 1089
MbiI CCGCTC 1 cut(s) 87
MboI GATC 4 cut(s) 496, 562, 607, 1087
MboII GAAGA 7 cut(s) 21, 114, 117, 219, 241, 659, 1121
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 292, 1003
MluCI AATT 6 cut(s) 365, 377, 681, 774, 844, 869
MlyI GAGTC 3 cut(s) 287, 810, 1148
MnlI CCTC 9 cut(s) 17, 70, 115, 179, 204, 257, 575, 705, 819
MroI TCCGGA 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 5 cut(s) 360, 653, 795, 879, 1053
MspA1I CMGCKG 1 cut(s) 1085
MspCI CTTAAG 1 cut(s) 878
MspI CCGG 2 cut(s) 545, 1044
MspR9I CCNGG 4 cut(s) 672, 731, 1021, 1045
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 3 cut(s) 672, 731, 1021
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 731, 872, 1007
NciI CCSGG 1 cut(s) 1045
NdeII GATC 4 cut(s) 496, 562, 607, 1087
NlaIII CATG 5 cut(s) 296, 536, 716, 929, 1073
NlaIV GGNNCC 2 cut(s) 190, 240
NmuCI GTSAC 1 cut(s) 644
NsbI TGCGCA 1 cut(s) 711
NspI RCATGY 1 cut(s) 536
PagI TCATGA 2 cut(s) 925, 1069
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 221, 785, 922
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 5 cut(s) 99, 170, 424, 478, 736
PleI GAGTC 3 cut(s) 286, 809, 1147
PpsI GAGTC 3 cut(s) 286, 809, 1147
Psp6I CCWGG 3 cut(s) 670, 729, 1019
PspGI CCWGG 3 cut(s) 670, 729, 1019
PspN4I GGNNCC 2 cut(s) 190, 240
PspPI GGNCC 1 cut(s) 1041
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 562
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 1085
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
SalI GTCGAC 1 cut(s) 1141
SaqAI TTAA 5 cut(s) 360, 653, 795, 879, 1053
SatI GCNGC 5 cut(s) 98, 169, 423, 477, 735
Sau3AI GATC 4 cut(s) 496, 562, 607, 1087
Sau96I GGNCC 1 cut(s) 1041
SchI GAGTC 3 cut(s) 287, 810, 1148
ScrFI CCNGG 4 cut(s) 672, 731, 1021, 1045
SduI GDGCHC 2 cut(s) 292, 1003
SinI GGWCC 1 cut(s) 1041
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 6 cut(s) 365, 377, 681, 774, 844, 869
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 4 cut(s) 85, 477, 590, 1010
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 670, 729, 1019, 1043
TaaI ACNGT 2 cut(s) 702, 1105
TaiI ACGT 1 cut(s) 249
TaqI TCGA 5 cut(s) 144, 150, 461, 1107, 1142
TasI AATT 6 cut(s) 365, 377, 681, 774, 844, 869
TatI WGTACW 1 cut(s) 702
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 3 cut(s) 221, 785, 922
Tru1I TTAA 5 cut(s) 360, 653, 795, 879, 1053
Tru9I TTAA 5 cut(s) 360, 653, 795, 879, 1053
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 4 cut(s) 97, 168, 422, 734
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 1 cut(s) 942
Tth111I GACNNNGTC 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 878
VneI GTGCAC 1 cut(s) 999
VpaK11BI GGWCC 1 cut(s) 1041
XagI CCTNNNNNAGG 1 cut(s) 20
XapI RAATTY 3 cut(s) 377, 844, 869
XceI RCATGY 1 cut(s) 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 516
XmiI GTMKAC 2 cut(s) 824, 1142
XmnI GAANNNNTTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.