Rh1CG302800

Haloacid dehalogenase-like hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001386
Physical Location & Seq
Reverse (-)
57716000 .. 57732940
16941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG302800.1

Sequence Viewer

Length: 603 bp
ATGGATGTTCTCTGTGATATTTTAAGATCTGGAGGGACTCCTGGATGGGATAATGGCCATCAGCCACCCGTTTATTTTGCCGCAGATGACCTTGAATATAAGGCTGCATTTCCTTCTCAGAGACTTGGAATGGGTGCATTCAGAATTGCACTAGAAAGCATATTCAACAGGTGGATCTTTGGTTGTGAACTTCTGATGAATCTACATGGAAATGGGTTCTTGGCACCCATCTTGGAAAGCCTTGTCTCACCATTATTGTCAGTTACCCGCAAGCTCCATGTGATTGCAAAGAAACTTAACATAATTGACTTGCTTTGGGATTATGTGGTCTTAACAGGACACTTCACAGATGATGGTGATAGGAATTTACATCGCCGAATCCTCAATGTTGTTGCCATACCATCTGCTTCTTGTGAGGACACATTTCAGCAAGCTATTTTGACATGCCTTTCCAATTGGAATCTGGACGGGAGGTTGTTTGCCCTCACTGTTGATCACTCCTTATGCTCCTCCATTGGAAATCTTGCAAGGGCTCATTCGAGTCAACAACCCATTGCTCAATTCTCAGCTACTAATACGACATTGCTATGCTCGTGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_6 Hydrolase_like

Protein Analysis

200

Amino Acids

22.14

Weight (kDa)

5.92

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 2 cut(s) 81, 268
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 364
AgsI TTSAA 2 cut(s) 95, 166
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 274, 434, 569
AluI AGCT 3 cut(s) 274, 434, 569
Alw26I GTCTC 2 cut(s) 115, 250
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 240, 368
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 535
BauI CACGAG 1 cut(s) 592
BbvI GCAGC 1 cut(s) 91
BccI CCATC 5 cut(s) 39, 66, 236, 347, 409
BciT130I CCWGG 1 cut(s) 42
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 115, 250
BfaI CTAG 1 cut(s) 152
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 81, 105
BlsI GCNGC 2 cut(s) 82, 106
Bme1390I CCNGG 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 51
Bse3DI GCAATG 2 cut(s) 552, 581
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 10, 50
BseMI GCAATG 2 cut(s) 552, 581
BseMII CTCAG 2 cut(s) 131, 579
BseRI GAGGAG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 115, 250
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 26, 174, 493
BspACI CCGC 2 cut(s) 81, 268
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 130, 578
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 552, 581
BssMI GATC 3 cut(s) 26, 174, 493
BssSI CACGAG 1 cut(s) 592
Bst2BI CACGAG 1 cut(s) 592
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 272, 432
BstDEI CTNAG 2 cut(s) 117, 565
BstF5I GGATG 2 cut(s) 10, 50
BstKTI GATC 3 cut(s) 29, 177, 496
BstMAI GTCTC 2 cut(s) 115, 250
BstMBI GATC 3 cut(s) 26, 174, 493
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 26, 174
BstYI RGATCY 2 cut(s) 26, 174
BsuRI GGCC 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 2 cut(s) 10, 50
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 272, 432
CviAII CATG 3 cut(s) 206, 278, 444
CviJI RGCY 8 cut(s) 57, 64, 104, 240, 274, 434, 533, 569
CviKI_1 RGCY 8 cut(s) 57, 64, 104, 240, 274, 434, 533, 569
DdeI CTNAG 2 cut(s) 117, 565
DpnI GATC 3 cut(s) 28, 176, 495
DpnII GATC 3 cut(s) 26, 174, 493
EaeI YGGCCR 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 535
FaeI CATG 3 cut(s) 209, 281, 447
FaqI GGGAC 1 cut(s) 49
FatI CATG 3 cut(s) 205, 277, 443
FauI CCCGC 1 cut(s) 275
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 2 cut(s) 81, 105
FokI GGATG 2 cut(s) 17, 57
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 2 cut(s) 81, 105
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 81, 105
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 3 cut(s) 209, 281, 447
HincII GTYRAC 1 cut(s) 545
HindII GTYRAC 1 cut(s) 545
HinfI GANTC 5 cut(s) 37, 199, 378, 460, 541
HphI GGTGA 2 cut(s) 240, 368
Hpy166II GTNNAC 2 cut(s) 188, 545
Hpy188I TCNGA 3 cut(s) 120, 143, 195
Hpy188III TCNNGA 2 cut(s) 30, 464
Hpy8I GTNNAC 2 cut(s) 188, 545
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 5 cut(s) 107, 137, 149, 287, 527
HpyF3I CTNAG 2 cut(s) 117, 565
Hsp92II CATG 3 cut(s) 209, 281, 447
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 3 cut(s) 26, 174, 493
LmnI GCTCC 2 cut(s) 279, 512
LpnPI CCDG 6 cut(s) 15, 27, 54, 154, 321, 449
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 28, 176, 495
MboI GATC 3 cut(s) 26, 174, 493
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 2 cut(s) 26, 174
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 5 cut(s) 144, 303, 364, 454, 560
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 2 cut(s) 31, 550
MnlI CCTC 6 cut(s) 26, 392, 409, 465, 494, 520
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 3 cut(s) 23, 297, 332
MslI CAYNNNNRTG 2 cut(s) 210, 586
Msp20I TGGCCA 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 454
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 42
NdeII GATC 3 cut(s) 26, 174, 493
NlaIII CATG 3 cut(s) 209, 281, 447
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 447
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 3 cut(s) 199, 378, 460
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 2 cut(s) 82, 106
PleI GAGTC 2 cut(s) 31, 549
PpsI GAGTC 2 cut(s) 31, 549
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 225
PsuI RGATCY 2 cut(s) 26, 174
RseI CAYNNNNRTG 2 cut(s) 210, 586
SaqAI TTAA 3 cut(s) 23, 297, 332
SatI GCNGC 2 cut(s) 81, 105
Sau3AI GATC 3 cut(s) 26, 174, 493
SchI GAGTC 2 cut(s) 31, 550
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 535
SetI ASST 6 cut(s) 93, 173, 276, 436, 476, 571
SmiMI CAYNNNNRTG 2 cut(s) 210, 586
Sse9I AATT 5 cut(s) 144, 303, 364, 454, 560
SsiI CCGC 2 cut(s) 81, 268
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 1 cut(s) 539
TasI AATT 5 cut(s) 144, 303, 364, 454, 560
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 3 cut(s) 199, 378, 460
Tru1I TTAA 3 cut(s) 23, 297, 332
Tru9I TTAA 3 cut(s) 23, 297, 332
TscAI CASTG 1 cut(s) 493
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 493
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.