Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001386

Physical Location & Seq

Genomic Coordinates Forward (+)

16664562 .. 16669908

Gene Structure 5347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20500.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTCGCCGATGAGATACCGGACGGCGATTCGGAGCAAAATCCGACTGCCGTTTCCGTTCCGGTCGCATCTGTACTCCTCTGAGTCTAGGATTGAGTGCAGGTCTGAACCACGGTCTTCGTTCGGAATTGCGTTTGACATTGACGGAGTTATTCTCGGTGGCCGTGCTCCGATCGGCGGCTCTCCTCAAGCTTTGAAGAAGCTGTATGGAGATTCCGGTAATTTGAAGGTTCCGTTTGTGTTTTTGACCAATGGAGGTGGCATCCCGGAGTCGAGAAGAGCTGCTGAACTAAGTGAAGTTCTGGGAGTCAATATCCTGCCTTCTCAGGTCGTACAGGGTCACACACCTTTTAGAACCTTGTTGAGGAGATATGAGAATGAATTGATTGTTGCTGTTGGAAAAGGGGAACCAGCTCTTGTAATGTCAGAGTATGGTTTCAAAAAAGTTCTCTCATTAGATGAGTATGCATCCTACTTCAAAGATATTGACCCGGTAGCTCAATATAAGATGTGGAGAACTAAGGAGGCATTGTATTGCAGTAGCCACTTGGAGGAATCAGTGCCAAGATATGATGTATACTCGGACAGGGTTAGTGCTGCTTTTGTCGTTAGTGATCCTGTAGATTGGGGCAGGGACATTCAGGTTCTCTGTGATATTTTAAGATCTGGAGGGATTCCTGGATGGAAGAATGGCAATCAGCCACCCCTTTATTTTGCCGCAGATGACCTTGAATATCAGGCTGCATTTCCTTCTCAAAGACTTGGAATGGGTGCTTTCAGAATTGCTCTAGAAAGCATCTTCAACAGGATTCACCATAGTACTTTGGAATATGTATCTTTCGGGAAGCCCAATCCGTTTGTATTTAAGAACTCTGAAGCTTTGTTGGCAGAGTTTCGACCATCTCAATATGATGATCATATTACAAATAGTGGATGCTCCCATTCACATGGTTTTAGAACCCTATATATGATTGGGGACAACCCTTTGGTTGATGTCAAAGGTGCTCAACAGGCCGGACATCCCTGGTTTTCTATTTTGACAAGGACTGGTGTTTTTAAGGGAAAAGATAATCATAAGGAGTTCCCAGCAGATATGGTTGTGGATACTGTAGAAGAGGCAGTGGACTTCATTCTGAAAAGGGAAGGAACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

385

Amino Acids

43.02

Weight (kDa)

6.81

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	43 - 147	4.9e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45740 AT3G45740
fragaria_vesca	FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500
malus_domestica	MD07G1181700.v1.1 MD11G1120100.v1.1
prunus_persica	Prupe.2G220600_v2.0.a1 Prupe.6G090300_v2.0.a1 Prupe.6G090300_v2.0.a1
pyrus_communis	pycom07g17450 pycom11g10150
rosa_chinensis	RchiOBHm_Chr1g0364361 RchiOBHm_Chr1g0364391 RchiOBHm_Chr5g0061761
rosa_laevigata	RLG00000027485 RLG00000027488 RLG00000035503
rosa_multiflora	Rmu_sc0003709.1_g000009 Rmu_sc0009489.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018970 Rroxscaffold_4G00292330 Rroxscaffold_4G00292360
rosa_rugosa	Rorug01G0315900 Rorug05G0343300
rosa_samantha	Rh1AG323700 Rh1AG324000 Rh1BG286400 Rh1BG286700 Rh1CG302800 Rh1CG303200 Rh1DG317900 Rh1DG318200 Rh5AG404400 Rh5BG417500 Rh5CG441900 Rh5DG431600
rosa_wichuraiana	Rw1G028680 Rw1G028710 Rw5G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	576
AciI	CCGC	2 cut(s)	177, 717
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	894
AfaI	GTAC	3 cut(s)	74, 333, 820
AfiI	CCNNNNNNNGG	3 cut(s)	176, 363, 550
AgsI	TTSAA	6 cut(s)	196, 226, 439, 478, 731, 802
AjnI	CCWGG	2 cut(s)	676, 1022
AluBI	AGCT	6 cut(s)	191, 202, 281, 413, 497, 878
AluI	AGCT	6 cut(s)	191, 202, 281, 413, 497, 878
Alw21I	GWGCWC	2 cut(s)	169, 1006
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	2 cut(s)	160, 1011
ApeKI	GCWGC	3 cut(s)	281, 596, 740
AsuC2I	CCSGG	2 cut(s)	266, 491
AsuHPI	GGTGA	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	169, 1006
BbvI	GCAGC	3 cut(s)	268, 583, 727
BccI	CCATC	2 cut(s)	675, 907
BceAI	ACGGC	3 cut(s)	34, 39, 147
BciT130I	CCWGG	2 cut(s)	678, 1024
BciVI	GTATCC	1 cut(s)	1096
BclI	TGATCA	1 cut(s)	913
BcnI	CCSGG	2 cut(s)	266, 491
BfaI	CTAG	2 cut(s)	87, 788
BfmI	CTRYAG	2 cut(s)	618, 1107
BfuAI	ACCTGC	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	1096
BglII	AGATCT	1 cut(s)	662
BisI	GCNGC	5 cut(s)	178, 282, 597, 717, 741
BlsI	GCNGC	5 cut(s)	179, 283, 598, 718, 742
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	4 cut(s)	266, 491, 678, 1024
BmiI	GGNNCC	2 cut(s)	231, 408
BmrFI	CCNGG	4 cut(s)	266, 491, 678, 1024
BmsI	GCATC	5 cut(s)	76, 270, 476, 804, 923
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	266, 491
BsaJI	CCNNGG	2 cut(s)	110, 1022
BsaWI	WCCGGW	3 cut(s)	18, 60, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 363, 550
Bse1I	ACTGG	1 cut(s)	1051
BseBI	CCWGG	2 cut(s)	678, 1024
BseDI	CCNNGG	2 cut(s)	110, 1022
BseGI	GGATG	5 cut(s)	261, 467, 686, 938, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	176, 363, 550
BseMII	CTCAG	2 cut(s)	72, 338
BseNI	ACTGG	1 cut(s)	1051
BseRI	GAGGAG	3 cut(s)	67, 174, 379
BseXI	GCAGC	3 cut(s)	268, 583, 727
BseYI	CCCAGC	1 cut(s)	1084
BsgI	GTGCAG	1 cut(s)	118
Bsh1285I	CGRYCG	2 cut(s)	65, 174
BshFI	GGCC	2 cut(s)	162, 1013
BsiEI	CGRYCG	2 cut(s)	65, 174
BsiHKAI	GWGCWC	2 cut(s)	169, 1006
BsiSI	CCGG	6 cut(s)	19, 61, 216, 266, 491, 1014
BslFI	GGGAC	2 cut(s)	647, 989
BslI	CCNNNNNNNGG	3 cut(s)	176, 363, 550
BsmFI	GGGAC	2 cut(s)	647, 989
BsnI	GGCC	2 cut(s)	162, 1013
Bsp1286I	GDGCHC	2 cut(s)	169, 1006
Bsp143I	GATC	4 cut(s)	171, 613, 662, 913
BspACI	CCGC	2 cut(s)	177, 717
BspANI	GGCC	2 cut(s)	162, 1013
BspCNI	CTCAG	2 cut(s)	73, 337
BspLI	GGNNCC	2 cut(s)	231, 408
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	1051
BssECI	CCNNGG	2 cut(s)	110, 1022
BssMI	GATC	4 cut(s)	171, 613, 662, 913
BssNAI	GTATAC	1 cut(s)	577
Bst1107I	GTATAC	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	678, 1024
Bst4CI	ACNGT	2 cut(s)	114, 1108
Bst6I	CTCTTC	2 cut(s)	271, 1107
BstDEI	CTNAG	4 cut(s)	81, 290, 324, 519
BstDSI	CCRYGG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	361
BstF5I	GGATG	5 cut(s)	261, 467, 686, 938, 1018
BstKTI	GATC	4 cut(s)	174, 616, 665, 916
BstMBI	GATC	4 cut(s)	171, 613, 662, 913
BstMCI	CGRYCG	2 cut(s)	65, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	884, 1010
BstNI	CCWGG	2 cut(s)	678, 1024
BstSCI	CCNGG	4 cut(s)	264, 489, 676, 1022
BstSFI	CTRYAG	2 cut(s)	618, 1107
BstV1I	GCAGC	3 cut(s)	268, 583, 727
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	662
BstZ17I	GTATAC	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	2 cut(s)	162, 1013
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	5 cut(s)	261, 467, 686, 938, 1018
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	2 cut(s)	564, 1125
BveI	ACCTGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	73, 332, 819
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	1 cut(s)	947
CviQI	GTAC	3 cut(s)	73, 332, 819
DdeI	CTNAG	4 cut(s)	81, 290, 324, 519
DpnI	GATC	4 cut(s)	173, 615, 664, 915
DpnII	GATC	4 cut(s)	171, 613, 662, 913
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	271, 1107
EarI	CTCTTC	2 cut(s)	271, 1107
Eco57I	CTGAAG	1 cut(s)	894
EcoNI	CCTNNNNNAGG	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	676, 1022
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	1 cut(s)	950
FaqI	GGGAC	2 cut(s)	647, 989
FatI	CATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	913
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	5 cut(s)	178, 282, 597, 717, 741
FokI	GGATG	5 cut(s)	248, 454, 693, 945, 1005
Fsp4HI	GCNGC	5 cut(s)	178, 282, 597, 717, 741
FspBI	CTAG	2 cut(s)	87, 788
GluI	GCNGC	5 cut(s)	178, 282, 597, 717, 741
GsaI	CCCAGC	1 cut(s)	1088
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	2 cut(s)	162, 1013
HapII	CCGG	6 cut(s)	19, 61, 216, 266, 491, 1014
Hin1II	CATG	1 cut(s)	950
HindIII	AAGCTT	2 cut(s)	189, 876
HinfI	GANTC	8 cut(s)	28, 83, 212, 269, 306, 554, 673, 808
HpaII	CCGG	6 cut(s)	19, 61, 216, 266, 491, 1014
HphI	GGTGA	1 cut(s)	803
Hpy166II	GTNNAC	2 cut(s)	577, 1123
Hpy188III	TCNNGA	4 cut(s)	273, 666, 788, 841
Hpy8I	GTNNAC	2 cut(s)	577, 1123
HpyAV	CCTTC	4 cut(s)	220, 330, 759, 1136
HpyCH4III	ACNGT	2 cut(s)	114, 1108
HpyCH4V	TGCA	4 cut(s)	99, 467, 537, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	884, 1010
HpyF3I	CTNAG	4 cut(s)	81, 290, 324, 519
Hsp92II	CATG	1 cut(s)	950
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	4 cut(s)	171, 613, 662, 913
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	3 cut(s)	33, 172, 941
Lsp1109I	GCAGC	3 cut(s)	268, 583, 727
LweI	GCATC	5 cut(s)	76, 270, 476, 804, 923
MaeI	CTAG	2 cut(s)	87, 788
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	173, 615, 664, 915
MboI	GATC	4 cut(s)	171, 613, 662, 913
MboII	GAAGA	6 cut(s)	108, 208, 288, 697, 790, 1124
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	2 cut(s)	169, 1006
MluCI	AATT	4 cut(s)	126, 220, 380, 780
MlyI	GAGTC	3 cut(s)	92, 278, 315
MmeI	TCCRAC	2 cut(s)	67, 376
MnlI	CCTC	8 cut(s)	88, 195, 248, 357, 517, 544, 662, 1108
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	4 cut(s)	659, 864, 1056, 1153
MslI	CAYNNNNRTG	1 cut(s)	945
MspI	CCGG	6 cut(s)	19, 61, 216, 266, 491, 1014
MspR9I	CCNGG	4 cut(s)	266, 491, 678, 1024
MvaI	CCWGG	2 cut(s)	678, 1024
MwoI	GCNNNNNNNGC	2 cut(s)	884, 1010
NciI	CCSGG	2 cut(s)	266, 491
NdeII	GATC	4 cut(s)	171, 613, 662, 913
NlaIII	CATG	1 cut(s)	950
NlaIV	GGNNCC	2 cut(s)	231, 408
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	5 cut(s)	28, 212, 554, 673, 808
PfoI	TCCNGGA	2 cut(s)	264, 676
PkrI	GCNGC	5 cut(s)	179, 283, 598, 718, 742
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	3 cut(s)	91, 277, 314
PpsI	GAGTC	3 cut(s)	91, 277, 314
Psp6I	CCWGG	2 cut(s)	676, 1022
PspFI	CCCAGC	1 cut(s)	1084
PspGI	CCWGG	2 cut(s)	676, 1022
PspN4I	GGNNCC	2 cut(s)	231, 408
PsuI	RGATCY	1 cut(s)	662
PvuI	CGATCG	1 cut(s)	174
RsaI	GTAC	3 cut(s)	74, 333, 820
RsaNI	GTAC	3 cut(s)	73, 332, 819
RseI	CAYNNNNRTG	1 cut(s)	945
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	4 cut(s)	659, 864, 1056, 1153
SatI	GCNGC	5 cut(s)	178, 282, 597, 717, 741
Sau3AI	GATC	4 cut(s)	171, 613, 662, 913
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	3 cut(s)	92, 278, 315
ScrFI	CCNGG	4 cut(s)	266, 491, 678, 1024
SduI	GDGCHC	2 cut(s)	169, 1006
SfaNI	GCATC	5 cut(s)	76, 270, 476, 804, 923
SfcI	CTRYAG	2 cut(s)	618, 1107
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	4 cut(s)	126, 220, 380, 780
SsiI	CCGC	2 cut(s)	177, 717
SspMI	CTAG	2 cut(s)	87, 788
StyD4I	CCNGG	4 cut(s)	264, 489, 676, 1022
TaaI	ACNGT	2 cut(s)	114, 1108
TaqI	TCGA	2 cut(s)	272, 895
TasI	AATT	4 cut(s)	126, 220, 380, 780
TatI	WGTACW	2 cut(s)	72, 818
TauI	GCSGC	2 cut(s)	180, 719
TfiI	GAWTC	5 cut(s)	28, 212, 554, 673, 808
Tru1I	TTAA	4 cut(s)	659, 864, 1056, 1153
Tru9I	TTAA	4 cut(s)	659, 864, 1056, 1153
TscAI	CASTG	2 cut(s)	564, 1125
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	281, 596, 740
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	393, 1117
TspGWI	ACGGA	4 cut(s)	45, 159, 222, 843
TspRI	CASTG	2 cut(s)	564, 1125
XagI	CCTNNNNNAGG	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	2 cut(s)	87, 788
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.