Rh1DG317900

Haloacid dehalogenase-like hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
54388415 .. 54390399
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG317900.1

Sequence Viewer

Length: 294 bp
ATGGTAAGTTGGCTAAGCGGTTCTGTGGTTAGCAGGGGTGGCATCCCAGAGTCGAAACGAGCTGCTGAACCAAGTGAAGTTCTGGGAGTCAATATCCCGCCTTTTCAGGTTCTCTGTGACATTTTAAGATCTGGAGGGATTCCTGGATGGGATAATGGCCATCAGCCACCCGTTTATTTTGCCGCAGATGACCTTGAATATAAGGCTGCATTTCCTTCTCAGAGACTTGGAATGGGTGCATTCAGAATTGCACTAGAAAGCATATTCAACAGATCTTTGGGTGTGAACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.46

Weight (kDa)

5.68

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 98, 183
AcoI YGGCCR 1 cut(s) 157
AgsI TTSAA 2 cut(s) 197, 268
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 217
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 62, 206
BalI TGGCCA 1 cut(s) 159
BbvI GCAGC 2 cut(s) 49, 193
BccI CCATC 2 cut(s) 141, 168
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 254
BglII AGATCT 2 cut(s) 128, 272
BisI GCNGC 3 cut(s) 63, 183, 207
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 3 cut(s) 64, 184, 208
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 42, 152
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 49, 193
BshFI GGCC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 128, 272
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 3 cut(s) 18, 98, 183
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 232
BssMI GATC 2 cut(s) 128, 272
Bst2UI CCWGG 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 14, 219
BstF5I GGATG 2 cut(s) 42, 152
BstKTI GATC 2 cut(s) 131, 275
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 128, 272
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 49, 193
BstX2I RGATCY 2 cut(s) 128, 272
BstYI RGATCY 2 cut(s) 128, 272
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 2 cut(s) 42, 152
CviJI RGCY 5 cut(s) 13, 62, 159, 166, 206
CviKI_1 RGCY 5 cut(s) 13, 62, 159, 166, 206
DdeI CTNAG 2 cut(s) 14, 219
DpnI GATC 2 cut(s) 130, 274
DpnII GATC 2 cut(s) 128, 272
EaeI YGGCCR 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 2 cut(s) 201, 263
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 63, 183, 207
FokI GGATG 2 cut(s) 29, 159
Fsp4HI GCNGC 3 cut(s) 63, 183, 207
FspBI CTAG 1 cut(s) 254
GluI GCNGC 3 cut(s) 63, 183, 207
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 159
HinfI GANTC 3 cut(s) 50, 87, 139
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 222, 245, 293
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 209, 239, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 14, 219
Kzo9I GATC 2 cut(s) 128, 272
LpnPI CCDG 7 cut(s) 19, 60, 68, 92, 117, 129, 156
Lsp1109I GCAGC 2 cut(s) 49, 193
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 130, 274
MboI GATC 2 cut(s) 128, 272
MflI RGATCY 2 cut(s) 128, 272
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 2 cut(s) 59, 96
MnlI CCTC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 2 cut(s) 128, 272
NmuCI GTSAC 1 cut(s) 116
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 3 cut(s) 64, 184, 208
PleI GAGTC 2 cut(s) 58, 95
PpsI GAGTC 2 cut(s) 58, 95
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PsuI RGATCY 2 cut(s) 128, 272
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 3 cut(s) 63, 183, 207
Sau3AI GATC 2 cut(s) 128, 272
SchI GAGTC 2 cut(s) 59, 96
ScrFI CCNGG 1 cut(s) 144
SetI ASST 3 cut(s) 64, 111, 195
SfaNI GCATC 1 cut(s) 51
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 18, 98, 183
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 62, 206
Tsp45I GTSAC 1 cut(s) 116
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.