Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001386

Physical Location & Seq

Genomic Coordinates Forward (+)

12112452 .. 12118002

Gene Structure 5551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAGCAAAACAAAATTGGATGTGAAATTGCAATATGGATCTAGGTTTTACAGATTAGGGAATGCACAAGTTACATTGAAGGTTCCGTTTCTGTTTTTGACCGATGAGTCGAAACGAGCTGCTGAACTAAGTGATGAAGTTCTGGGAGTCAATATCGTGCCTTTTCAGGTTGTACAGAGTCACACACCTTTTAGAAATTTGTTCACGAGGTATATGCCAGCTTTAGCAGATAAGTTAAATCATTCATACAGCATCTCATTTGACTTTTTGGCTAAATACACATTCATGCAGTTACCATCACCAAAAGAGAAATTCATTTTATGGTTCTACAAGCTTGATTGTTTGTGGCCCATTAAAACCTCTGAGCTTATTCATGTCTTGAATCAGGTTCTCTGTGACATTTTAAGATCTGGAGGGATTCCTGGATGGGATAATGGCCATCAGCCACCCGCTGCATTTCCTTCTCAGAGACTTGGAATGGGTGCATTCAGAATTGCACTAGAAAGCATATTCAACAGAGTTCAACATAGTACTTGGGAATATGTATCTTTCGGGAATCCCAATCCATTTGTATTTAAGAACACTTTTCTAGCATCTCAATTTGATGATCATATTTCAAATAGTGGATGCTCTCAATCACATGATTTCAAAACCCTACATATGATTAGAGATAACCCTTTGGGAAAAGACGATCATAAGGAGTTTCCAGCAGATATGGTTGTCGATACTGTAGAAGAGGCAGTGGATTTCATTCTGAAACGGGAAAGAATATCTTCGCAAAGAGTTATGTGGCAACCCCTCCCAATTAATAGAAGCTTCAAGCAGGAGAGATCAAGCACCATTTCTGCAAACATTAGCTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

289

Amino Acids

33.1

Weight (kDa)

8.67

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45740 AT3G45740
fragaria_vesca	FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500
malus_domestica	MD07G1181700.v1.1 MD11G1120100.v1.1
prunus_persica	Prupe.2G220600_v2.0.a1 Prupe.6G090300_v2.0.a1 Prupe.6G090300_v2.0.a1
pyrus_communis	pycom07g17450 pycom11g10150
rosa_chinensis	RchiOBHm_Chr1g0364361 RchiOBHm_Chr1g0364391 RchiOBHm_Chr5g0061761
rosa_laevigata	RLG00000027485 RLG00000027488 RLG00000035503
rosa_multiflora	Rmu_sc0003709.1_g000009 Rmu_sc0009489.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018970 Rroxscaffold_4G00292330 Rroxscaffold_4G00292360
rosa_rugosa	Rorug01G0315900 Rorug05G0343300
rosa_samantha	Rh1AG323700 Rh1AG324000 Rh1BG286400 Rh1BG286700 Rh1CG302800 Rh1CG303200 Rh1DG317900 Rh1DG318200 Rh5AG404400 Rh5BG417500 Rh5CG441900 Rh5DG431600
rosa_wichuraiana	Rw1G028680 Rw1G028710 Rw5G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	196, 311
AfaI	GTAC	2 cut(s)	174, 532
AgsI	TTSAA	7 cut(s)	79, 382, 514, 524, 618, 649, 820
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	6 cut(s)	119, 221, 334, 367, 816, 858
AluI	AGCT	6 cut(s)	119, 221, 334, 367, 816, 858
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	347, 436
ApeKI	GCWGC	2 cut(s)	119, 452
ApoI	RAATTY	2 cut(s)	196, 311
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	438
BauI	CACGAG	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	106, 439
BccI	CCATC	3 cut(s)	304, 420, 447
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	3 cut(s)	42, 500, 590
BfmI	CTRYAG	1 cut(s)	729
BglII	AGATCT	1 cut(s)	407
BisI	GCNGC	2 cut(s)	120, 453
BlsI	GCNGC	2 cut(s)	121, 454
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	261, 602, 617
BpmI	CTGGAG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	423
BseGI	GGATG	3 cut(s)	25, 431, 632
BseMII	CTCAG	2 cut(s)	354, 479
BseXI	GCAGC	2 cut(s)	106, 439
BshFI	GGCC	2 cut(s)	349, 438
BsmAI	GTCTC	1 cut(s)	463
BsmI	GAATGC	2 cut(s)	67, 485
BsnI	GGCC	2 cut(s)	349, 438
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	38, 407, 607, 691, 830
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	2 cut(s)	349, 438
BspCNI	CTCAG	2 cut(s)	355, 478
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	172
BssMI	GATC	5 cut(s)	38, 407, 607, 691, 830
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	1 cut(s)	729
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	128, 363, 465
BstF5I	GGATG	3 cut(s)	25, 431, 632
BstKTI	GATC	5 cut(s)	41, 410, 610, 694, 833
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	5 cut(s)	38, 407, 607, 691, 830
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	106, 439
BstX2I	RGATCY	2 cut(s)	38, 407
BstYI	RGATCY	2 cut(s)	38, 407
BsuRI	GGCC	2 cut(s)	349, 438
BtsCI	GGATG	3 cut(s)	25, 431, 632
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	1 cut(s)	747
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	173, 531
CviAII	CATG	3 cut(s)	286, 374, 641
CviQI	GTAC	2 cut(s)	173, 531
DdeI	CTNAG	3 cut(s)	128, 363, 465
DpnI	GATC	5 cut(s)	40, 409, 609, 693, 832
DpnII	GATC	5 cut(s)	38, 407, 607, 691, 830
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	421
FaeI	CATG	3 cut(s)	289, 377, 644
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FatI	CATG	3 cut(s)	285, 373, 640
FauI	CCCGC	1 cut(s)	457
FauNDI	CATATG	1 cut(s)	660
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	120, 453
FokI	GGATG	3 cut(s)	32, 438, 639
Fsp4HI	GCNGC	2 cut(s)	120, 453
FspBI	CTAG	3 cut(s)	42, 500, 590
GluI	GCNGC	2 cut(s)	120, 453
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	349, 438
Hin1II	CATG	3 cut(s)	289, 377, 644
HindIII	AAGCTT	2 cut(s)	332, 814
HinfI	GANTC	6 cut(s)	107, 147, 178, 382, 418, 556
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	4 cut(s)	364, 468, 491, 756
Hpy188III	TCNNGA	4 cut(s)	205, 379, 411, 553
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	73, 471
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4V	TGCA	7 cut(s)	31, 65, 289, 455, 485, 497, 848
HpyF3I	CTNAG	3 cut(s)	128, 363, 465
Hsp92II	CATG	3 cut(s)	289, 377, 644
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	38, 407, 607, 691, 830
LpnPI	CCDG	9 cut(s)	128, 152, 231, 371, 396, 408, 435, 720, 809
Lsp1109I	GCAGC	2 cut(s)	106, 439
LweI	GCATC	3 cut(s)	261, 602, 617
MaeI	CTAG	3 cut(s)	42, 500, 590
MaeIII	GTNAC	4 cut(s)	70, 179, 291, 395
MalI	GATC	5 cut(s)	40, 409, 609, 693, 832
MboI	GATC	5 cut(s)	38, 407, 607, 691, 830
MboII	GAAGA	2 cut(s)	746, 765
MflI	RGATCY	2 cut(s)	38, 407
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	7 cut(s)	14, 26, 196, 311, 492, 599, 804
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	3 cut(s)	116, 156, 187
MnlI	CCTC	5 cut(s)	201, 370, 407, 730, 809
Mox20I	TGGCCA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	772
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	5 cut(s)	236, 354, 404, 576, 807
MslI	CAYNNNNRTG	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	423
Mva1269I	GAATGC	2 cut(s)	67, 485
MvaI	CCWGG	1 cut(s)	423
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	5 cut(s)	38, 407, 607, 691, 830
NlaIII	CATG	3 cut(s)	289, 377, 644
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	179, 395
PctI	GAATGC	2 cut(s)	67, 485
PdmI	GAANNNNTTC	1 cut(s)	772
PfeI	GAWTC	3 cut(s)	382, 418, 556
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	121, 454
PleI	GAGTC	3 cut(s)	115, 155, 186
PpsI	GAGTC	3 cut(s)	115, 155, 186
PshBI	ATTAAT	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	2 cut(s)	38, 407
RsaI	GTAC	2 cut(s)	174, 532
RsaNI	GTAC	2 cut(s)	173, 531
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	5 cut(s)	236, 354, 404, 576, 807
SatI	GCNGC	2 cut(s)	120, 453
Sau3AI	GATC	5 cut(s)	38, 407, 607, 691, 830
Sau96I	GGNCC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	3 cut(s)	116, 156, 187
ScrFI	CCNGG	1 cut(s)	423
SfaNI	GCATC	3 cut(s)	261, 602, 617
SfcI	CTRYAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	7 cut(s)	14, 26, 196, 311, 492, 599, 804
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	3 cut(s)	42, 500, 590
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	730
TaqI	TCGA	2 cut(s)	110, 723
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	7 cut(s)	14, 26, 196, 311, 492, 599, 804
TatI	WGTACW	2 cut(s)	172, 530
TfiI	GAWTC	3 cut(s)	382, 418, 556
Tru1I	TTAA	5 cut(s)	236, 354, 404, 576, 807
Tru9I	TTAA	5 cut(s)	236, 354, 404, 576, 807
TscAI	CASTG	1 cut(s)	747
TseFI	GTSAC	2 cut(s)	179, 395
TseI	GCWGC	2 cut(s)	119, 452
Tsp45I	GTSAC	2 cut(s)	179, 395
TspDTI	ATGAA	6 cut(s)	150, 234, 274, 304, 362, 739
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	747
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	2 cut(s)	196, 311
XmnI	GAANNNNTTC	1 cut(s)	772
XspI	CTAG	3 cut(s)	42, 500, 590
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.