Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009489.1

Orthogroup ID

OG0001386

Physical Location & Seq

Genomic Coordinates Forward (+)

38130 .. 41829

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009489.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ctgtttttgaccaatgggggtggcatcccagagtcgagacgagctgctgaactaagtgaagttctgggggtcaatatcctgccttctcaggttgtacagggtcatacaccttttagaaacttgttgaggagatatgagaatgaattgattgttgctgttggaaaaggggaaccagctcttgtaatgtcagagtatggtttcaaaaaagttctctcattagatgagtatgcatcctacttcaaggatattgacccggtagctcaatataagatgtggagaactaagcaggcattggattgcagtagccacttgaaggaattggtgcccagatacgatgtatactctgacagggttagtgctgcttttgtcgttagtgatcctgtagattggggcagggacattcaggttctctgtgacattttaagatctggagggcctggatgggagaatggcaatcagccacccctttattttgccgcagatgaccttgaatatcaggctgcatttccttctcagagacttggaatgggtgctttcagaattgcactagaaagcatcttcaacagaattcaccatagtactttggaatatgtatcttttgggaagccccatccgtttgtatttaagaacactgaagctctattggcagagtttcaaccatctcaatttgatgatcatatttcagaaagtggatgctctcagtcacatgatttcaaaaccctatatatgatcggagacaaccctttggttgatgtcaaaggtgctcaacaggccggacatccctggttttctattttgacaaggacaggtgtttttaagggaaaggataatcataaggagtttccagcagatatggttgtggatactgtagaagaggcagtggacttcattctgaaaagagaaggaacttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

304

Amino Acids

34.1

Weight (kDa)

5.3

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45740 AT3G45740
fragaria_vesca	FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500
malus_domestica	MD07G1181700.v1.1 MD11G1120100.v1.1
prunus_persica	Prupe.2G220600_v2.0.a1 Prupe.6G090300_v2.0.a1 Prupe.6G090300_v2.0.a1
pyrus_communis	pycom07g17450 pycom11g10150
rosa_chinensis	RchiOBHm_Chr1g0364361 RchiOBHm_Chr1g0364391 RchiOBHm_Chr5g0061761
rosa_laevigata	RLG00000027485 RLG00000027488 RLG00000035503
rosa_multiflora	Rmu_sc0003709.1_g000009 Rmu_sc0009489.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018970 Rroxscaffold_4G00292330 Rroxscaffold_4G00292360
rosa_rugosa	Rorug01G0315900 Rorug05G0343300
rosa_samantha	Rh1AG323700 Rh1AG324000 Rh1BG286400 Rh1BG286700 Rh1CG302800 Rh1CG303200 Rh1DG317900 Rh1DG318200 Rh5AG404400 Rh5BG417500 Rh5CG441900 Rh5DG431600
rosa_wichuraiana	Rw1G028680 Rw1G028710 Rw5G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	2 cut(s)	96, 580
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	7 cut(s)	202, 241, 313, 491, 562, 656, 715
AjnI	CCWGG	2 cut(s)	436, 782
AluBI	AGCT	4 cut(s)	44, 176, 260, 638
AluI	AGCT	4 cut(s)	44, 176, 260, 638
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	3 cut(s)	31, 511, 729
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	2 cut(s)	434, 771
ApeKI	GCWGC	3 cut(s)	44, 359, 500
ApoI	RAATTY	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	3 cut(s)	31, 346, 487
BccI	CCATC	3 cut(s)	435, 618, 667
BciT130I	CCWGG	2 cut(s)	438, 784
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	31, 511, 729
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	381, 867
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	4 cut(s)	45, 360, 477, 501
BlsI	GCNGC	4 cut(s)	46, 361, 478, 502
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	3 cut(s)	254, 438, 784
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	171, 324
BmrFI	CCNGG	3 cut(s)	254, 438, 784
BmsI	GCATC	4 cut(s)	33, 239, 564, 683
BpmI	CTGGAG	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	438, 784
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	6 cut(s)	24, 230, 446, 610, 698, 778
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	101, 527, 713
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	31, 346, 487
BshFI	GGCC	2 cut(s)	436, 773
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	766
BsiSI	CCGG	2 cut(s)	254, 774
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	31, 511, 729
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	436, 773
Bsp1286I	GDGCHC	2 cut(s)	327, 766
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	4 cut(s)	376, 425, 673, 729
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	436, 773
BspCNI	CTCAG	3 cut(s)	100, 526, 712
BspLI	GGNNCC	2 cut(s)	171, 324
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	4 cut(s)	376, 425, 673, 729
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	438, 784
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	1 cut(s)	867
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	6 cut(s)	53, 87, 282, 513, 699, 912
BstF5I	GGATG	6 cut(s)	24, 230, 446, 610, 698, 778
BstKTI	GATC	4 cut(s)	379, 428, 676, 732
BstMAI	GTCTC	3 cut(s)	31, 511, 729
BstMBI	GATC	4 cut(s)	376, 425, 673, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	644, 770
BstNI	CCWGG	2 cut(s)	438, 784
BstSCI	CCNGG	3 cut(s)	252, 436, 782
BstSFI	CTRYAG	2 cut(s)	381, 867
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	31, 346, 487
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BstZ17I	GTATAC	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	2 cut(s)	436, 773
BtsCI	GGATG	6 cut(s)	24, 230, 446, 610, 698, 778
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	2 cut(s)	630, 885
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	95, 579
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	2 cut(s)	95, 579
DdeI	CTNAG	6 cut(s)	53, 87, 282, 513, 699, 912
DpnI	GATC	4 cut(s)	378, 427, 675, 731
DpnII	GATC	4 cut(s)	376, 425, 673, 729
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	436, 782
EcoT22I	ATGCAT	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	710
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	45, 360, 477, 501
FokI	GGATG	6 cut(s)	11, 217, 453, 597, 705, 765
Fsp4HI	GCNGC	4 cut(s)	45, 360, 477, 501
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	4 cut(s)	45, 360, 477, 501
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	436, 773
HapII	CCGG	2 cut(s)	254, 774
Hin1II	CATG	1 cut(s)	710
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	254, 774
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	340, 883
Hpy188I	TCNGA	7 cut(s)	190, 346, 516, 539, 685, 734, 894
Hpy188III	TCNNGA	2 cut(s)	36, 429
Hpy8I	GTNNAC	2 cut(s)	340, 883
HpyAV	CCTTC	4 cut(s)	93, 307, 519, 896
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4V	TGCA	4 cut(s)	230, 300, 503, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	644, 770
HpyF3I	CTNAG	6 cut(s)	53, 87, 282, 513, 699, 912
Hsp92II	CATG	1 cut(s)	710
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	376, 425, 673, 729
Lsp1109I	GCAGC	3 cut(s)	31, 346, 487
LweI	GCATC	4 cut(s)	33, 239, 564, 683
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	413, 702
MalI	GATC	4 cut(s)	378, 427, 675, 731
MboI	GATC	4 cut(s)	376, 425, 673, 729
MboII	GAAGA	2 cut(s)	550, 884
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	327, 766
MluCI	AATT	5 cut(s)	143, 317, 540, 567, 665
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	120, 425, 868
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	3 cut(s)	422, 624, 816
MspI	CCGG	2 cut(s)	254, 774
MspR9I	CCNGG	3 cut(s)	254, 438, 784
MvaI	CCWGG	2 cut(s)	438, 784
MwoI	GCNNNNNNNGC	2 cut(s)	644, 770
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	4 cut(s)	376, 425, 673, 729
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	2 cut(s)	171, 324
NmuCI	GTSAC	2 cut(s)	413, 702
NsiI	ATGCAT	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	46, 361, 478, 502
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	436, 782
PspGI	CCWGG	2 cut(s)	436, 782
PspN4I	GGNNCC	2 cut(s)	171, 324
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	2 cut(s)	96, 580
RsaNI	GTAC	2 cut(s)	95, 579
SaqAI	TTAA	3 cut(s)	422, 624, 816
SatI	GCNGC	4 cut(s)	45, 360, 477, 501
Sau3AI	GATC	4 cut(s)	376, 425, 673, 729
Sau96I	GGNCC	1 cut(s)	434
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	254, 438, 784
SduI	GDGCHC	2 cut(s)	327, 766
SfaNI	GCATC	4 cut(s)	33, 239, 564, 683
SfcI	CTRYAG	2 cut(s)	381, 867
Sse9I	AATT	5 cut(s)	143, 317, 540, 567, 665
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	252, 436, 782
TaaI	ACNGT	1 cut(s)	868
TaqI	TCGA	1 cut(s)	35
TasI	AATT	5 cut(s)	143, 317, 540, 567, 665
TatI	WGTACW	2 cut(s)	94, 578
TauI	GCSGC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	422, 624, 816
Tru9I	TTAA	3 cut(s)	422, 624, 816
TscAI	CASTG	2 cut(s)	637, 885
TseFI	GTSAC	2 cut(s)	413, 702
TseI	GCWGC	3 cut(s)	44, 359, 500
Tsp45I	GTSAC	2 cut(s)	413, 702
TspDTI	ATGAA	2 cut(s)	156, 877
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	2 cut(s)	637, 885
XapI	RAATTY	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.