Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001386

Physical Location & Seq

Genomic Coordinates Reverse (-)

55565701 .. 55569459

Gene Structure 3759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTTCTCTGTGACATTTTAAGATCTGGAGGGATTCCTGGATGGGATAATGGCCATCAGCCACCCGTTTATTTTGCCGCAGATGACCTTGAATATAAGGCTGCATTTCCTTCTCAGAGACTTGGAATGGGTGCATTCAGAATTGCACTAGAAAGCATATTCAACAGTTTGCTCTGTCAAGGGTTTCATAATTGCTCCACTCATCGAGCACTGGGTCATTGCCTTCATCAATCGGTTGAATCAAGGTTGCTTTGGTTATCACTCGGTAACACAGATTTACTCTCTCATCTCAATAAGCATATTGTCGAATACCTGGTGTGCACTATGCTTTCCTATGATTTTCTCATCTTGTTATGGAGCATTTCATCGAGCATCTGGTATGCGTCACTAATCTCTATAATATGGTTATGGATTTTGGAGCTTGCTAATCTGGTTCATTATCCTGGAGTCCTATTCCTTGTTTGTGCATTTTGTCAAACAGCTGCTATGCATGAGTTTCTATATATGGATAGTCTTGACTTGCAAATTCTTCAATTGTCATTTGGTGCTAAGGTGATGAAGACTAATTGCGGAAATGAGATTGAAGAATTTGGTAGAGGAGAAAACATAACTCAAAGTGCTTCAGATATTCAAAAGAAATATGAAAAGAAGCTTGCTGCCCATCAAGGAAATGCCACAGAGGAAAAGGATAAAGAGTTATTGCCTTATGGAGATGGGTTCAACTTCCATGGAATCATCTCATCTTGCTTCGTGCCTCACTTGACTGTTTACACAGAACTAGAAGAGAAGACACTAATGGAGAATTTGGAAAAACTTGTTCAGGAGGAGACATGGGATGTTGAGGAGGGAAGTCAGAATAATGTTTTGTTAAGTAGCATGCAAATTGAAGTCAGTAACAATGTAGTCTACAATTTCTCTCCGCTTTTCTTTTTGTTTTTCTTCTCCTTGTTTCTTTGCGTTTCGTTTTCAATAAATCATGAATGTTATCAATTGTCCTATCTAAATGTTCCATGTACTAATTATAAACCAGTACATCGCTTTTCACATTATGTCAATAACCAAATCTTTGGGTGTGAACTTCTGATGAATCTACATGGAAATGGGTTCTTGGCACCCCTTGGAAAGCCTTGTCTCACCATTATTGTCAGTTACCCGCAGGCTCCATGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0006810 GO:0006890 GO:0006950 GO:0006970 GO:0007009 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010256 GO:0010286 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps53_N

Protein Analysis

390

Amino Acids

44.24

Weight (kDa)

5.31

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps53_N	PF04100	210 - 276	5.4e-09	Vps53, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45740 AT3G45740
fragaria_vesca	FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500
malus_domestica	MD07G1181700.v1.1 MD11G1120100.v1.1
prunus_persica	Prupe.2G220600_v2.0.a1 Prupe.6G090300_v2.0.a1 Prupe.6G090300_v2.0.a1
pyrus_communis	pycom07g17450 pycom11g10150
rosa_chinensis	RchiOBHm_Chr1g0364361 RchiOBHm_Chr1g0364391 RchiOBHm_Chr5g0061761
rosa_laevigata	RLG00000027485 RLG00000027488 RLG00000035503
rosa_multiflora	Rmu_sc0003709.1_g000009 Rmu_sc0009489.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018970 Rroxscaffold_4G00292330 Rroxscaffold_4G00292360
rosa_rugosa	Rorug01G0315900 Rorug05G0343300
rosa_samantha	Rh1AG323700 Rh1AG324000 Rh1BG286400 Rh1BG286700 Rh1CG302800 Rh1CG303200 Rh1DG317900 Rh1DG318200 Rh5AG404400 Rh5BG417500 Rh5CG441900 Rh5DG431600
rosa_wichuraiana	Rw1G028680 Rw1G028710 Rw5G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1023
AccB1I	GGYRCC	1 cut(s)	1111
AccI	GTMKAC	1 cut(s)	906
AciI	CCGC	4 cut(s)	78, 570, 920, 1154
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	525, 587, 802
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	2 cut(s)	1015, 1032
AgsI	TTSAA	9 cut(s)	92, 163, 239, 533, 584, 632, 721, 887, 969
AjnI	CCWGG	3 cut(s)	37, 312, 442
AluBI	AGCT	3 cut(s)	421, 482, 652
AluI	AGCT	3 cut(s)	421, 482, 652
Alw21I	GWGCWC	2 cut(s)	211, 323
Alw26I	GTCTC	3 cut(s)	112, 821, 1136
Alw44I	GTGCAC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	101, 482, 656
ApoI	RAATTY	3 cut(s)	525, 587, 802
AsuHPI	GGTGA	2 cut(s)	565, 1126
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	1111
BbsI	GAAGAC	2 cut(s)	566, 794
Bbv12I	GWGCWC	2 cut(s)	211, 323
BbvI	GCAGC	3 cut(s)	88, 469, 643
BccI	CCATC	4 cut(s)	36, 63, 669, 707
BciT130I	CCWGG	3 cut(s)	39, 314, 444
BcoDI	GTCTC	3 cut(s)	112, 821, 1136
BfaI	CTAG	2 cut(s)	149, 779
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	4 cut(s)	78, 102, 483, 657
BlsI	GCNGC	4 cut(s)	79, 103, 484, 658
Bme1390I	CCNGG	3 cut(s)	39, 314, 444
BmiI	GGNNCC	2 cut(s)	1113, 1161
BmrFI	CCNGG	3 cut(s)	39, 314, 444
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	566, 794
BpmI	CTGGAG	2 cut(s)	48, 465
Bpu10I	CCTNAGC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	727, 1117
Bse1I	ACTGG	2 cut(s)	216, 1028
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	3 cut(s)	39, 314, 444
BseDI	CCNNGG	2 cut(s)	727, 1117
BseGI	GGATG	2 cut(s)	47, 841
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	216, 1028
BseRI	GAGGAG	3 cut(s)	612, 839, 857
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	88, 469, 643
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	1111
BsiHKAI	GWGCWC	2 cut(s)	211, 323
BsmAI	GTCTC	3 cut(s)	112, 821, 1136
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	211, 323
Bsp143I	GATC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	4 cut(s)	78, 570, 920, 1154
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	2 cut(s)	1113, 1161
BspT107I	GGYRCC	1 cut(s)	1111
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	216, 1028
BssECI	CCNNGG	2 cut(s)	727, 1117
BssMI	GATC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	727, 1117
Bst2UI	CCWGG	3 cut(s)	39, 314, 444
Bst4CI	ACNGT	2 cut(s)	167, 766
Bst6I	CTCTTC	1 cut(s)	777
BstC8I	GCNNGC	4 cut(s)	423, 654, 878, 1158
BstDEI	CTNAG	2 cut(s)	114, 549
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	2 cut(s)	47, 841
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	3 cut(s)	112, 821, 1136
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	1166
BstNI	CCWGG	3 cut(s)	39, 314, 444
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	3 cut(s)	37, 312, 442
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	88, 469, 643
BstV2I	GAAGAC	2 cut(s)	566, 794
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	1067
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	727
BtgZI	GCGATG	1 cut(s)	1019
BtsCI	GGATG	2 cut(s)	47, 841
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	423, 654, 878, 1158
CciI	TCATGA	1 cut(s)	976
CseI	GACGC	1 cut(s)	372
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	1014, 1031
CviAII	CATG	8 cut(s)	491, 728, 831, 877, 977, 1011, 1094, 1164
CviJI	RGCY	8 cut(s)	54, 61, 101, 421, 482, 652, 1126, 1160
CviKI_1	RGCY	8 cut(s)	54, 61, 101, 421, 482, 652, 1126, 1160
CviQI	GTAC	2 cut(s)	1014, 1031
DdeI	CTNAG	2 cut(s)	114, 549
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	2 cut(s)	727, 1117
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	37, 312, 442
EcoT14I	CCWWGG	2 cut(s)	727, 1117
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	727, 1117
FaeI	CATG	8 cut(s)	494, 731, 834, 880, 980, 1014, 1097, 1167
FatI	CATG	8 cut(s)	490, 727, 830, 876, 976, 1010, 1093, 1163
FauI	CCCGC	1 cut(s)	1161
FblI	GTMKAC	1 cut(s)	906
Fnu4HI	GCNGC	4 cut(s)	78, 102, 483, 657
FokI	GGATG	2 cut(s)	54, 848
Fsp4HI	GCNGC	4 cut(s)	78, 102, 483, 657
FspBI	CTAG	2 cut(s)	149, 779
GluI	GCNGC	4 cut(s)	78, 102, 483, 657
GsuI	CTGGAG	2 cut(s)	48, 465
HaeIII	GGCC	1 cut(s)	54
HgaI	GACGC	1 cut(s)	372
Hin1II	CATG	8 cut(s)	494, 731, 834, 880, 980, 1014, 1097, 1167
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	34, 239, 447, 732, 1087
HphI	GGTGA	2 cut(s)	565, 1126
Hpy166II	GTNNAC	4 cut(s)	321, 769, 907, 1076
Hpy188I	TCNGA	5 cut(s)	117, 140, 625, 855, 1083
Hpy188III	TCNNGA	4 cut(s)	27, 515, 821, 977
Hpy8I	GTNNAC	4 cut(s)	321, 769, 907, 1076
HpyAV	CCTTC	2 cut(s)	120, 233
HpyCH4III	ACNGT	2 cut(s)	167, 766
HpyCH4V	TGCA	8 cut(s)	104, 134, 146, 321, 467, 490, 523, 880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1166
HpyF3I	CTNAG	2 cut(s)	114, 549
Hsp92II	CATG	8 cut(s)	494, 731, 834, 880, 980, 1014, 1097, 1167
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	4 cut(s)	200, 357, 418, 1165
Lsp1109I	GCAGC	3 cut(s)	88, 469, 643
LweI	GCATC	1 cut(s)	381
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	2 cut(s)	149, 779
MaeIII	GTNAC	5 cut(s)	11, 266, 384, 893, 1148
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	6 cut(s)	521, 571, 596, 794, 799, 931
MfeI	CAATTG	2 cut(s)	533, 989
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	211, 323
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	7 cut(s)	23, 590, 673, 765, 817, 835, 838
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	2 cut(s)	20, 869
MslI	CAYNNNNRTG	1 cut(s)	1098
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	3 cut(s)	39, 314, 444
MunI	CAATTG	2 cut(s)	533, 989
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	3 cut(s)	39, 314, 444
MwoI	GCNNNNNNNGC	1 cut(s)	1166
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	8 cut(s)	494, 731, 834, 880, 980, 1014, 1097, 1167
NlaIV	GGNNCC	2 cut(s)	1113, 1161
NmuCI	GTSAC	2 cut(s)	11, 384
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	880
PaeI	GCATGC	1 cut(s)	880
PagI	TCATGA	1 cut(s)	976
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	4 cut(s)	34, 239, 732, 1087
PfoI	TCCNGGA	2 cut(s)	37, 442
PkrI	GCNGC	4 cut(s)	79, 103, 484, 658
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	1023
Psp6I	CCWGG	3 cut(s)	37, 312, 442
PspGI	CCWGG	3 cut(s)	37, 312, 442
PspN4I	GGNNCC	2 cut(s)	1113, 1161
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	1015, 1032
RsaNI	GTAC	2 cut(s)	1014, 1031
RseI	CAYNNNNRTG	1 cut(s)	1098
SaqAI	TTAA	2 cut(s)	20, 869
SatI	GCNGC	4 cut(s)	78, 102, 483, 657
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	39, 314, 444
SduI	GDGCHC	2 cut(s)	211, 323
SetI	ASST	7 cut(s)	90, 248, 315, 423, 484, 555, 654
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SphI	GCATGC	1 cut(s)	880
SsiI	CCGC	4 cut(s)	78, 570, 920, 1154
SspMI	CTAG	2 cut(s)	149, 779
StyD4I	CCNGG	3 cut(s)	37, 312, 442
StyI	CCWWGG	2 cut(s)	727, 1117
TaaI	ACNGT	2 cut(s)	167, 766
TaqI	TCGA	3 cut(s)	205, 306, 368
TatI	WGTACW	2 cut(s)	1013, 1030
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	4 cut(s)	34, 239, 732, 1087
Tru1I	TTAA	2 cut(s)	20, 869
Tru9I	TTAA	2 cut(s)	20, 869
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	11, 384
TseI	GCWGC	3 cut(s)	101, 482, 656
Tsp45I	GTSAC	2 cut(s)	11, 384
TspDTI	ATGAA	8 cut(s)	176, 215, 354, 425, 572, 657, 993, 1100
TspRI	CASTG	1 cut(s)	216
VneI	GTGCAC	1 cut(s)	319
XapI	RAATTY	3 cut(s)	525, 587, 802
XceI	RCATGY	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	906
XspI	CTAG	2 cut(s)	149, 779
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.