Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001386

Physical Location & Seq

Genomic Coordinates Reverse (-)

10938193 .. 10941447

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1120100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGCCTCCGAATTCTGAGAAATGCTTGGCGGAGCCGAAACGGTGACCTACTGTCATCCGCTTTCTCCCAAATCATCATACGCTCATTCTCGCAACTCTCCTCGCAGTCCACACCGGATGCCTTCGGCATTGCGTTCGACATCGACGGCGTCGTTTTACGAAGCGAAGCTCCCATCGGAGGCTCTCCTCGGGCCTTCGGAAGATTGTACGAAAATTCTGGTAATCTCAGGATTCCATACGTGTTCTTGACAAATGGAGGTGGGTTTAGTGAATCCAAAAGAGCCCTTGAGTTAAGTTCACTTTTAGGAGTGAAGATTTCACCTTTACAGGTTTTACAGGGCCATACACCTTTTAAGCAGTTAGTAAACAGATTTGAGAATGAACTCATTGTTGCTGTGGGAAAAGGAGAACCTGCTGCTGTGATGGCTGAATATGGATTTAAAAATGTTCTTTCAATTGATGAATATGCATCCTGCTTCGAAAACATTGACCCGCTAGCACCATATAAAAAATGGATAACTAAGCAAGTTGCTGATCAGTATAGCACAGTTAAGGCTGTTGCTGCCAAAGATCTTGTTCTCTCACAAAGAGTTCAGGCGGCGTTTGTAGTTAGTGATTCTGTTGATTGGAGCAGAGACATTCAGGTTCTATGCGACATTTTAAGAACCGGTGGTCTTCCTGGTCGGGGAATTGGACACCAACCACAGCTGTATTTTGCGAATGATGACCTTGCATACCAGGCTGCTTTTCCTTCTGAGCGTTTTGGAATGGGAGCTTTCAGAATAGCACTGGAATCCATCTTTAATAGAATCCACCCTCATGCTCTGGAGTATACAACTTTCGGGAAGCCAAATCCATTCGTATTCAAGAATGCAGAACTTGTACTTAAGCAACTTGTGTTATCTCTTCAAGACAAGGTTCAAGTTCTCAATCCAGCAAATGCTGGAAGCCATAATTTCAAAACACTGTATATGATAGGAGATAATCCTGCAGTTGACATCAATGGCGCACGGCAGGCTGGCCATCCCTGGTTTTCTATTCTGACAAGGACAGGGGTTTTCAAGGGAAAGGAAAATCATGCTGAGTTTCCGGCGGATCTGGTTGTTGACACTGTGGAAGAAGCTGTGGACTTTATTTTGAGAAAGGAGTGCAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

387

Amino Acids

42.55

Weight (kDa)

7.06

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	44 - 148	3.6e-18	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	281 - 375	5.5e-12	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45740 AT3G45740
fragaria_vesca	FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500
malus_domestica	MD07G1181700.v1.1 MD11G1120100.v1.1
prunus_persica	Prupe.2G220600_v2.0.a1 Prupe.6G090300_v2.0.a1 Prupe.6G090300_v2.0.a1
pyrus_communis	pycom07g17450 pycom11g10150
rosa_chinensis	RchiOBHm_Chr1g0364361 RchiOBHm_Chr1g0364391 RchiOBHm_Chr5g0061761
rosa_laevigata	RLG00000027485 RLG00000027488 RLG00000035503
rosa_multiflora	Rmu_sc0003709.1_g000009 Rmu_sc0009489.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018970 Rroxscaffold_4G00292330 Rroxscaffold_4G00292360
rosa_rugosa	Rorug01G0315900 Rorug05G0343300
rosa_samantha	Rh1AG323700 Rh1AG324000 Rh1BG286400 Rh1BG286700 Rh1CG302800 Rh1CG303200 Rh1DG317900 Rh1DG318200 Rh5AG404400 Rh5BG417500 Rh5CG441900 Rh5DG431600
rosa_wichuraiana	Rw1G028680 Rw1G028710 Rw5G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	833
AciI	CCGC	5 cut(s)	31, 60, 494, 599, 1094
AclWI	GGATC	1 cut(s)	1104
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	2 cut(s)	12, 214
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	209, 885
AfiI	CCNNNNNNNGG	2 cut(s)	179, 686
AflII	CTTAAG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	6 cut(s)	456, 868, 911, 923, 961, 1063
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	679, 738, 1028
AluBI	AGCT	5 cut(s)	170, 709, 776, 1124, 1155
AluI	AGCT	5 cut(s)	170, 709, 776, 1124, 1155
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	1104
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	3 cut(s)	192, 340, 1021
ApeKI	GCWGC	4 cut(s)	416, 563, 743, 1152
ApoI	RAATTY	2 cut(s)	12, 214
AsiGI	ACCGGT	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	1010
AspS9I	GGNCC	2 cut(s)	192, 340
AsuHPI	GGTGA	2 cut(s)	56, 312
AsuII	TTCGAA	1 cut(s)	480
AsuNHI	GCTAGC	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	1023
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	403, 550, 730
BccI	CCATC	4 cut(s)	182, 418, 806, 1032
BceAI	ACGGC	2 cut(s)	163, 1028
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	3 cut(s)	681, 740, 1030
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	990
BfrI	CTTAAG	1 cut(s)	887
BfuAI	ACCTGC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	5 cut(s)	417, 564, 600, 744, 1153
BlsI	GCNGC	5 cut(s)	418, 565, 601, 745, 1154
Bme1390I	CCNGG	3 cut(s)	681, 740, 1030
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	192, 340
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	681, 740, 1030
BmsI	GCATC	2 cut(s)	109, 479
BmtI	GCTAGC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	668
BplI	GAGNNNNNCTC	1 cut(s)	1139
BpmI	CTGGAG	1 cut(s)	848
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	188, 1028
BsaWI	WCCGGW	2 cut(s)	115, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 686
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	3 cut(s)	681, 740, 1030
BseDI	CCNNGG	2 cut(s)	188, 1028
BseGI	GGATG	4 cut(s)	56, 124, 470, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	179, 686
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	4 cut(s)	8, 241, 747, 1074
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	2 cut(s)	91, 177
BseXI	GCAGC	3 cut(s)	403, 550, 730
BshFI	GGCC	3 cut(s)	194, 342, 1023
BshTI	ACCGGT	1 cut(s)	668
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	116, 669, 1091
BslI	CCNNNNNNNGG	2 cut(s)	179, 686
BsmAI	GTCTC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	194, 342, 1023
BsoBI	CYCGRG	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	535, 571, 1096
BspACI	CCGC	5 cut(s)	31, 60, 494, 599, 1094
BspANI	GGCC	3 cut(s)	194, 342, 1023
BspCNI	CTCAG	4 cut(s)	9, 240, 748, 1075
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	994
BspMI	ACCTGC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	1104
BspT104I	TTCGAA	1 cut(s)	480
BspTI	CTTAAG	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	795
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	188, 1028
BssMI	GATC	3 cut(s)	535, 571, 1096
BssNAI	GTATAC	1 cut(s)	834
BssNI	GRCGYC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	834
Bst2UI	CCWGG	3 cut(s)	681, 740, 1030
Bst4CI	ACNGT	5 cut(s)	44, 54, 550, 969, 1114
Bst6I	CTCTTC	1 cut(s)	912
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	887
BstBAI	YACGTR	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	498, 1017, 1021
BstDEI	CTNAG	6 cut(s)	17, 227, 522, 756, 1083, 1158
BstEII	GGTNACC	1 cut(s)	44
BstF5I	GGATG	4 cut(s)	56, 124, 470, 1024
BstHHI	GCGC	1 cut(s)	1010
BstKTI	GATC	3 cut(s)	538, 574, 1099
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	3 cut(s)	535, 571, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	425, 563, 740, 1016
BstNI	CCWGG	3 cut(s)	681, 740, 1030
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	3 cut(s)	679, 738, 1028
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	3 cut(s)	403, 550, 730
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	571, 1096
BstYI	RGATCY	2 cut(s)	571, 1096
BstZ17I	GTATAC	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	194, 342, 1023
BtsCI	GGATG	4 cut(s)	56, 124, 470, 1024
BtsIMutI	CAGTG	3 cut(s)	788, 965, 1110
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	498, 1017, 1021
CfoI	GCGC	1 cut(s)	1010
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	192, 340
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	208, 884
CspAI	ACCGGT	1 cut(s)	668
CviAII	CATG	2 cut(s)	821, 1079
CviQI	GTAC	2 cut(s)	208, 884
DdeI	CTNAG	6 cut(s)	17, 227, 522, 756, 1083, 1158
DpnI	GATC	3 cut(s)	537, 573, 1098
DpnII	GATC	3 cut(s)	535, 571, 1096
DraI	TTTAAA	1 cut(s)	442
DriI	GACNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	912
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	912
EciI	GGCGGA	2 cut(s)	46, 1109
Eco24I	GRGCYC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	189
Eco91I	GGTNACC	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	3 cut(s)	679, 738, 1028
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	2 cut(s)	824, 1082
FatI	CATG	2 cut(s)	820, 1078
FauI	CCCGC	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	833
Fnu4HI	GCNGC	5 cut(s)	417, 564, 600, 744, 1153
FokI	GGATG	4 cut(s)	43, 131, 457, 1011
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	5 cut(s)	417, 564, 600, 744, 1153
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	1009
GluI	GCNGC	5 cut(s)	417, 564, 600, 744, 1153
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	3 cut(s)	194, 342, 1023
HapII	CCGG	3 cut(s)	116, 669, 1091
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	1010
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	824, 1082
Hin6I	GCGC	1 cut(s)	1008
HinP1I	GCGC	1 cut(s)	1008
HincII	GTYRAC	2 cut(s)	997, 1108
HindII	GTYRAC	2 cut(s)	997, 1108
HinfI	GANTC	5 cut(s)	232, 272, 617, 794, 810
HpaII	CCGG	3 cut(s)	116, 669, 1091
HphI	GGTGA	2 cut(s)	56, 312
Hpy166II	GTNNAC	7 cut(s)	111, 299, 367, 834, 997, 1108, 1129
Hpy188I	TCNGA	7 cut(s)	11, 18, 179, 200, 757, 782, 1044
Hpy188III	TCNNGA	6 cut(s)	229, 247, 827, 844, 868, 911
Hpy8I	GTNNAC	7 cut(s)	111, 299, 367, 834, 997, 1108, 1129
Hpy99I	CGWCG	2 cut(s)	149, 155
HpyAV	CCTTC	3 cut(s)	133, 205, 762
HpyCH4III	ACNGT	5 cut(s)	44, 54, 550, 969, 1114
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	5 cut(s)	470, 734, 875, 992, 1152
HpyF10VI	GCNNNNNNNGC	4 cut(s)	425, 563, 740, 1016
HpyF3I	CTNAG	6 cut(s)	17, 227, 522, 756, 1083, 1158
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	824, 1082
HspAI	GCGC	1 cut(s)	1008
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	535, 571, 1096
LmnI	GCTCC	4 cut(s)	33, 175, 630, 773
Lsp1109I	GCAGC	3 cut(s)	403, 550, 730
LweI	GCATC	2 cut(s)	109, 479
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	537, 573, 1098
MboI	GATC	3 cut(s)	535, 571, 1096
MboII	GAAGA	5 cut(s)	213, 325, 668, 899, 1130
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	2 cut(s)	571, 1096
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	1023
MluCI	AATT	5 cut(s)	12, 214, 456, 690, 955
MluNI	TGGCCA	1 cut(s)	1023
MnlI	CCTC	6 cut(s)	17, 112, 173, 198, 251, 828
Mox20I	TGGCCA	1 cut(s)	1023
Mph1103I	ATGCAT	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	1023
MseI	TTAA	7 cut(s)	293, 354, 441, 552, 662, 804, 888
MslI	CAYNNNNRTG	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	1023
MspA1I	CMGCKG	1 cut(s)	709
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	3 cut(s)	116, 669, 1091
MspR9I	CCNGG	3 cut(s)	681, 740, 1030
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	3 cut(s)	681, 740, 1030
MwoI	GCNNNNNNNGC	4 cut(s)	425, 563, 740, 1016
NdeII	GATC	3 cut(s)	535, 571, 1096
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	2 cut(s)	824, 1082
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	5 cut(s)	232, 272, 617, 794, 810
PflFI	GACNNNGTC	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	5 cut(s)	418, 565, 601, 745, 1154
Ppu21I	YACGTR	1 cut(s)	241
Psp6I	CCWGG	3 cut(s)	679, 738, 1028
PspEI	GGTNACC	1 cut(s)	44
PspGI	CCWGG	3 cut(s)	679, 738, 1028
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	192, 340
PstI	CTGCAG	1 cut(s)	994
PsuI	RGATCY	2 cut(s)	571, 1096
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	209, 885
RsaNI	GTAC	2 cut(s)	208, 884
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	7 cut(s)	293, 354, 441, 552, 662, 804, 888
SatI	GCNGC	5 cut(s)	417, 564, 600, 744, 1153
Sau3AI	GATC	3 cut(s)	535, 571, 1096
Sau96I	GGNCC	2 cut(s)	192, 340
ScrFI	CCNGG	3 cut(s)	681, 740, 1030
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	109, 479
SfcI	CTRYAG	1 cut(s)	990
SfuI	TTCGAA	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	2 cut(s)	287, 887
SmoI	CTYRAG	2 cut(s)	287, 887
Sse9I	AATT	5 cut(s)	12, 214, 456, 690, 955
SsiI	CCGC	5 cut(s)	31, 60, 494, 599, 1094
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	679, 738, 1028
TaaI	ACNGT	5 cut(s)	44, 54, 550, 969, 1114
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	138, 144, 480
TasI	AATT	5 cut(s)	12, 214, 456, 690, 955
TatI	WGTACW	1 cut(s)	883
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	5 cut(s)	232, 272, 617, 794, 810
Tru1I	TTAA	7 cut(s)	293, 354, 441, 552, 662, 804, 888
Tru9I	TTAA	7 cut(s)	293, 354, 441, 552, 662, 804, 888
TscAI	CASTG	3 cut(s)	795, 972, 1117
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	4 cut(s)	416, 563, 743, 1152
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	396, 477
TspRI	CASTG	3 cut(s)	795, 972, 1117
Tth111I	GACNNNGTC	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	887
XapI	RAATTY	2 cut(s)	12, 214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	833
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.