MD07G1181700.v1.1

Haloacid dehalogenase-like hydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
26234763 .. 26238761
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1181700.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGACGCCGATGCGATACCGCGCGGTCTTCCGGATTCCTCAGAGCAAAAACAGAGCACCATTTTTCTTCCAATTTCGTCCCTACTTTCAGTCCAATTATCAACAATCCCGGCCCGAACGGTCTTCGTTTGGGATTGCGTTCGACATCGACGGGGTCATTCTCCGCGGCCGGGCTCCGGTGGGAGGGTCGCCTCGAGCTTTGAGGAAACTGTACGGACACTCAGGTACTTTGAAGGTTCCTTTTGTGTTTTTGACCAACGGAGGTGGCGTCCCTGAATCAAGACGAGCAACTGAGTTAACTGAAATTTTGGGAGTTAACATCCTGCCTTCTCAGGTTGTCCAGGGTCACACACCTTTTAAAAATTTGTTGACGAGATATGAAAATGAACTCATTGTTGCTCTGGGAAAAGGGGAACCGGCTCTTGTAATGTCTGAGTATGGTTTCAAAAAGGTTCTCTCATTAGATGAGTATGCATCGCACTTCGAGAATATTGATCCCGTATCCCAATATAAGATGTGGAGAACTAAGCAGACATCGGATTGTAGTAGCCAACACAAGGAGTCTGTGCCGAGATATGATGTTTATTCTGACAGGGTTAGTGCAGCTTTTGTTGTCAGCGATCCTGTGGATTGGGGTAGGGATATTCAGGTTCTCTGTGACATTCTAAGATCTGGAGGGCTTCCTGGACAAGAGAATGGGCATCAACCACCTCTATATTTTGCCGCAGATGATCTTGAGTATCAGGCTGCATTTCCTTCTGAGCGACTTGGAATGGGTGCCTTCAGAATTGCACTAGAAAGCATCTTCAACCGAATTCACCATGATGCTCTGGAATATGTATCTTTTGGGAAGCCAAATCCGTTTGTATTTAAGAACACTGAAACTCTGTTGGCACAGCTTCAACCATCTCATTGTGATAATGATATTACAACTGCTGGAGACTCTCCGTCACATGCTTTCAAAACCCTTTATATGATCGGCGACAACCCTTCAGTTGATGTCAAAGGTGCTCGGCAGGCTGGACATCCTTGGTTTTCTATTTTGACGAGGACTGGCGTTTTCAAGGGGGAAGATAATCATGCTGAGTTTCCGGCAGACCTGGTAAGAAGTTCCTTCGCTTTTGTTCCTTCTGTAGGTTGTAGATACTGTACAAGAGGCAGTGGACTACATTCTGAAGAGGGAAGGAACTTCTGTAGGTTGTTAATGCTCATAAGCGCACTTGCTTTTACTACAAGAATGTTGAATACAAGTGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

46.84

Weight (kDa)

8.43

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_6 PF13344 45 - 149 3.9e-18 Haloacid dehalogenase-like hydrolase
Hydrolase_like PF13242 282 - 372 1.1e-09 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 776
AccII CGCG 3 cut(s) 21, 23, 165
AccIII TCCGGA 1 cut(s) 30
AciI CCGC 5 cut(s) 19, 23, 163, 165, 723
AclWI GGATC 2 cut(s) 488, 614
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 3 cut(s) 303, 361, 813
AcuI CTGAAG 3 cut(s) 766, 975, 1194
AcyI GRCGYC 2 cut(s) 5, 267
AfaI GTAC 3 cut(s) 212, 226, 1150
AfiI CCNNNNNNNGG 5 cut(s) 169, 175, 182, 556, 1133
AgsI TTSAA 7 cut(s) 232, 445, 808, 902, 961, 1063, 1243
AhdI GACNNNNNGTC 1 cut(s) 946
AjnI CCWGG 3 cut(s) 339, 682, 1098
AluBI AGCT 3 cut(s) 197, 605, 898
AluI AGCT 3 cut(s) 197, 605, 898
Alw21I GWGCWC 2 cut(s) 58, 1012
Alw26I GTCTC 1 cut(s) 933
AlwI GGATC 2 cut(s) 488, 614
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 30
AoxI GGCC 2 cut(s) 110, 166
ApeKI GCWGC 2 cut(s) 602, 746
ApoI RAATTY 3 cut(s) 303, 361, 813
AspLEI GCGC 2 cut(s) 23, 1217
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 2 cut(s) 109, 170
AsuHPI GGTGA 1 cut(s) 809
AvaI CYCGRG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 2 cut(s) 19, 114
Bbv12I GWGCWC 2 cut(s) 58, 1012
BbvI GCAGC 2 cut(s) 614, 733
BccI CCATC 1 cut(s) 913
BciT130I CCWGG 3 cut(s) 341, 684, 1100
BciVI GTATCC 1 cut(s) 511
BcnI CCSGG 2 cut(s) 109, 170
BcoDI GTCTC 1 cut(s) 933
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 2 cut(s) 1131, 1192
BfuI GTATCC 1 cut(s) 511
BglII AGATCT 1 cut(s) 668
BisI GCNGC 4 cut(s) 166, 603, 723, 747
BlsI GCNGC 4 cut(s) 167, 604, 724, 748
Bme1390I CCNGG 5 cut(s) 109, 170, 341, 684, 1100
BmeRI GACNNNNNGTC 1 cut(s) 946
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 4 cut(s) 174, 237, 414, 778
BmrFI CCNGG 5 cut(s) 109, 170, 341, 684, 1100
BmsI GCATC 4 cut(s) 482, 709, 810, 814
BpiI GAAGAC 2 cut(s) 19, 114
BpmI CTGGAG 2 cut(s) 693, 957
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 2 cut(s) 109, 170
BsaHI GRCGYC 2 cut(s) 5, 267
BsaJI CCNNGG 3 cut(s) 163, 340, 1028
BsaWI WCCGGW 2 cut(s) 30, 175
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 175, 182, 556, 1133
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 1057
BseAI TCCGGA 1 cut(s) 30
BseBI CCWGG 3 cut(s) 341, 684, 1100
BseDI CCNNGG 3 cut(s) 163, 340, 1028
BseGI GGATG 2 cut(s) 318, 1024
BseLI CCNNNNNNNGG 5 cut(s) 169, 175, 182, 556, 1133
BseMII CTCAG 7 cut(s) 53, 234, 282, 344, 423, 750, 1074
BseNI ACTGG 1 cut(s) 1057
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 614, 733
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 3 cut(s) 21, 23, 165
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 112, 168
BshNI GGYRCC 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 58, 1012
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 6 cut(s) 31, 109, 169, 176, 416, 1091
BslFI GGGAC 2 cut(s) 63, 254
BslI CCNNNNNNNGG 5 cut(s) 169, 175, 182, 556, 1133
BsmAI GTCTC 1 cut(s) 933
BsmFI GGGAC 2 cut(s) 63, 254
BsnI GGCC 2 cut(s) 112, 168
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 58, 175, 1012
Bsp13I TCCGGA 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 1148
Bsp143I GATC 5 cut(s) 493, 619, 668, 730, 975
BspACI CCGC 5 cut(s) 19, 23, 163, 165, 723
BspANI GGCC 2 cut(s) 112, 168
BspCNI CTCAG 7 cut(s) 52, 233, 283, 343, 424, 751, 1075
BspEI TCCGGA 1 cut(s) 30
BspFNI CGCG 3 cut(s) 21, 23, 165
BspLI GGNNCC 4 cut(s) 174, 237, 414, 778
BspPI GGATC 2 cut(s) 488, 614
BspT107I GGYRCC 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 1148
BsrI ACTGG 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 163, 340, 1028
BssMI GATC 5 cut(s) 493, 619, 668, 730, 975
BssNI GRCGYC 2 cut(s) 5, 267
BssT1I CCWWGG 1 cut(s) 1028
Bst2UI CCWGG 3 cut(s) 341, 684, 1100
Bst4CI ACNGT 3 cut(s) 120, 210, 1148
Bst6I CTCTTC 1 cut(s) 1170
BstACI GRCGYC 2 cut(s) 5, 267
BstAUI TGTACA 1 cut(s) 1148
BstC8I GCNNGC 1 cut(s) 1017
BstDEI CTNAG 9 cut(s) 39, 220, 291, 330, 432, 525, 665, 759, 1083
BstDSI CCRYGG 1 cut(s) 163
BstENI CCTNNNNNAGG 1 cut(s) 1131
BstF5I GGATG 2 cut(s) 318, 1024
BstFNI CGCG 3 cut(s) 21, 23, 165
BstHHI GCGC 2 cut(s) 23, 1217
BstKTI GATC 5 cut(s) 496, 622, 671, 733, 978
BstMAI GTCTC 1 cut(s) 933
BstMBI GATC 5 cut(s) 493, 619, 668, 730, 975
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 1016
BstNI CCWGG 3 cut(s) 341, 684, 1100
BstNSI RCATGY 1 cut(s) 956
BstSCI CCNGG 5 cut(s) 107, 168, 339, 682, 1098
BstSFI CTRYAG 2 cut(s) 1131, 1192
BstUI CGCG 3 cut(s) 21, 23, 165
BstV1I GCAGC 2 cut(s) 614, 733
BstV2I GAAGAC 2 cut(s) 19, 114
BstX2I RGATCY 1 cut(s) 668
BstYI RGATCY 1 cut(s) 668
BstZI CGGCCG 1 cut(s) 166
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 112, 168
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 318, 1024
BtsI GCAGTG 1 cut(s) 1165
BtsIMutI CAGTG 2 cut(s) 876, 1165
Cac8I GCNNGC 1 cut(s) 1017
CfoI GCGC 2 cut(s) 23, 1217
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 111
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 2 cut(s) 13, 256
CsiI ACCWGGT 1 cut(s) 1098
Csp6I GTAC 3 cut(s) 211, 225, 1149
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 3 cut(s) 821, 953, 1079
CviQI GTAC 3 cut(s) 211, 225, 1149
DdeI CTNAG 9 cut(s) 39, 220, 291, 330, 432, 525, 665, 759, 1083
DpnI GATC 5 cut(s) 495, 621, 670, 732, 977
DpnII GATC 5 cut(s) 493, 619, 668, 730, 975
DraI TTTAAA 1 cut(s) 358
DriI GACNNNNNGTC 1 cut(s) 946
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 1170
Eam1105I GACNNNNNGTC 1 cut(s) 946
EarI CTCTTC 1 cut(s) 1170
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 1028
Eco24I GRGCYC 1 cut(s) 175
Eco52I CGGCCG 1 cut(s) 166
Eco57I CTGAAG 3 cut(s) 766, 975, 1194
Eco88I CYCGRG 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 1131
EcoRI GAATTC 1 cut(s) 813
EcoRII CCWGG 3 cut(s) 339, 682, 1098
EcoT14I CCWWGG 1 cut(s) 1028
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 1028
FaeI CATG 3 cut(s) 824, 956, 1082
FaqI GGGAC 2 cut(s) 63, 254
FatI CATG 3 cut(s) 820, 952, 1078
Fnu4HI GCNGC 4 cut(s) 166, 603, 723, 747
FokI GGATG 2 cut(s) 305, 1011
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 4 cut(s) 166, 603, 723, 747
FspBI CTAG 1 cut(s) 794
GlaI GCGC 2 cut(s) 22, 1216
GluI GCNGC 4 cut(s) 166, 603, 723, 747
GsuI CTGGAG 2 cut(s) 693, 957
HaeIII GGCC 2 cut(s) 112, 168
HapII CCGG 6 cut(s) 31, 109, 169, 176, 416, 1091
HgaI GACGC 2 cut(s) 13, 256
HhaI GCGC 2 cut(s) 23, 1217
Hin1I GRCGYC 2 cut(s) 5, 267
Hin1II CATG 3 cut(s) 824, 956, 1082
Hin6I GCGC 2 cut(s) 21, 1215
HinP1I GCGC 2 cut(s) 21, 1215
HincII GTYRAC 3 cut(s) 297, 316, 369
HindII GTYRAC 3 cut(s) 297, 316, 369
HinfI GANTC 4 cut(s) 34, 275, 560, 941
HpaI GTTAAC 2 cut(s) 297, 316
HpaII CCGG 6 cut(s) 31, 109, 169, 176, 416, 1091
HphI GGTGA 1 cut(s) 809
Hpy166II GTNNAC 4 cut(s) 297, 316, 369, 1163
Hpy188I TCNGA 7 cut(s) 42, 433, 538, 589, 760, 785, 1174
Hpy188III TCNNGA 7 cut(s) 31, 279, 484, 672, 734, 830, 1257
Hpy8I GTNNAC 4 cut(s) 297, 316, 369, 1163
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 8 cut(s) 226, 336, 765, 790, 999, 1123, 1137, 1176
HpyCH4III ACNGT 3 cut(s) 120, 210, 1148
HpyCH4V TGCA 4 cut(s) 473, 602, 749, 791
HpyF10VI GCNNNNNNNGC 1 cut(s) 1016
HpyF3I CTNAG 9 cut(s) 39, 220, 291, 330, 432, 525, 665, 759, 1083
Hsp92I GRCGYC 2 cut(s) 5, 267
Hsp92II CATG 3 cut(s) 824, 956, 1082
HspAI GCGC 2 cut(s) 21, 1215
Kpn2I TCCGGA 1 cut(s) 30
KspAI GTTAAC 2 cut(s) 297, 316
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 5 cut(s) 493, 619, 668, 730, 975
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 614, 733
LweI GCATC 4 cut(s) 482, 709, 810, 814
MabI ACCWGGT 1 cut(s) 1098
MaeI CTAG 1 cut(s) 794
MaeIII GTNAC 3 cut(s) 344, 656, 948
MalI GATC 5 cut(s) 495, 621, 670, 732, 977
MboI GATC 5 cut(s) 493, 619, 668, 730, 975
MboII GAAGA 6 cut(s) 19, 58, 114, 796, 1082, 1187
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 3 cut(s) 58, 175, 1012
MluCI AATT 6 cut(s) 71, 94, 303, 361, 786, 813
MlyI GAGTC 2 cut(s) 569, 935
Mph1103I ATGCAT 1 cut(s) 475
MroI TCCGGA 1 cut(s) 30
MseI TTAA 5 cut(s) 296, 315, 357, 870, 1202
MslI CAYNNNNRTG 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 6 cut(s) 31, 109, 169, 176, 416, 1091
MspR9I CCNGG 5 cut(s) 109, 170, 341, 684, 1100
MvaI CCWGG 3 cut(s) 341, 684, 1100
MvnI CGCG 3 cut(s) 21, 23, 165
MwoI GCNNNNNNNGC 1 cut(s) 1016
NciI CCSGG 2 cut(s) 109, 170
NdeII GATC 5 cut(s) 493, 619, 668, 730, 975
NlaIII CATG 3 cut(s) 824, 956, 1082
NlaIV GGNNCC 4 cut(s) 174, 237, 414, 778
NmeAIII GCCGAG 2 cut(s) 594, 991
NmuCI GTSAC 3 cut(s) 344, 656, 948
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 956
PaeR7I CTCGAG 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 2 cut(s) 34, 275
PflFI GACNNNGTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 4 cut(s) 167, 604, 724, 748
PleI GAGTC 2 cut(s) 568, 935
PpsI GAGTC 2 cut(s) 568, 935
Psp6I CCWGG 3 cut(s) 339, 682, 1098
PspGI CCWGG 3 cut(s) 339, 682, 1098
PspN4I GGNNCC 4 cut(s) 174, 237, 414, 778
PspPI GGNCC 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 192
PsuI RGATCY 1 cut(s) 668
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 3 cut(s) 212, 226, 1150
RsaNI GTAC 3 cut(s) 211, 225, 1149
RseI CAYNNNNRTG 1 cut(s) 822
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 5 cut(s) 296, 315, 357, 870, 1202
SatI GCNGC 4 cut(s) 166, 603, 723, 747
Sau3AI GATC 5 cut(s) 493, 619, 668, 730, 975
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 2 cut(s) 569, 935
ScrFI CCNGG 5 cut(s) 109, 170, 341, 684, 1100
SduI GDGCHC 3 cut(s) 58, 175, 1012
SexAI ACCWGGT 1 cut(s) 1098
SfaNI GCATC 4 cut(s) 482, 709, 810, 814
SfcI CTRYAG 2 cut(s) 1131, 1192
Sfr274I CTCGAG 1 cut(s) 192
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 2 cut(s) 192, 734
SmoI CTYRAG 2 cut(s) 192, 734
Sse9I AATT 6 cut(s) 71, 94, 303, 361, 786, 813
SsiI CCGC 5 cut(s) 19, 23, 163, 165, 723
SspI AATATT 1 cut(s) 490
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 5 cut(s) 107, 168, 339, 682, 1098
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 3 cut(s) 120, 210, 1148
TaqI TCGA 4 cut(s) 141, 147, 193, 483
TasI AATT 6 cut(s) 71, 94, 303, 361, 786, 813
TatI WGTACW 1 cut(s) 1148
TauI GCSGC 2 cut(s) 168, 725
TfiI GAWTC 2 cut(s) 34, 275
Tru1I TTAA 5 cut(s) 296, 315, 357, 870, 1202
Tru9I TTAA 5 cut(s) 296, 315, 357, 870, 1202
TscAI CASTG 2 cut(s) 883, 1165
TseFI GTSAC 3 cut(s) 344, 656, 948
TseI GCWGC 2 cut(s) 602, 746
Tsp45I GTSAC 3 cut(s) 344, 656, 948
TspDTI ATGAA 2 cut(s) 393, 399
TspGWI ACGGA 4 cut(s) 228, 273, 849, 936
TspRI CASTG 2 cut(s) 883, 1165
Tth111I GACNNNGTC 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 1131
XapI RAATTY 3 cut(s) 303, 361, 813
XceI RCATGY 1 cut(s) 956
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 1 cut(s) 794
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.