Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001386

Physical Location & Seq

Genomic Coordinates Reverse (-)

56397782 .. 56399590

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTAAGTTGGCTAAGCGGTTCTGTGGTTAGCAGGGGTGGCATCCCAGAGTCGAAACGAGCTGCTGAACTAAGTGAAGTTCTGGGAGTCAATATCCTGCCTTCTCAGGTTCTCTGTGACGTTTTAAGATCTGGAGGGATTCCTGGATGGGATAATGGCCATCAGCCACCCGTTTATTTTGCCGCAGATGACCTTGAATATAAGGCTGCATTTCCTTCTCAGAGACTTGGAATGGGTGCATTCAGAATTGCACTAGAAAGCATATTCAACAGATCTTTGGGCCGGTGTGAACTTCTGATGAATCTACATGGAAATGGGTTCTTGGCACCCATCTTGGAAAAGCCTTGTCTCACCATTATTGTCAGTTACCCGCAAGCTCCATGTGCTTGCAAAGAAAACTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

135

Amino Acids

14.54

Weight (kDa)

6.08

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45740 AT3G45740
fragaria_vesca	FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_3g34110 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500 FvH4_7g20500
malus_domestica	MD07G1181700.v1.1 MD11G1120100.v1.1
prunus_persica	Prupe.2G220600_v2.0.a1 Prupe.6G090300_v2.0.a1 Prupe.6G090300_v2.0.a1
pyrus_communis	pycom07g17450 pycom11g10150
rosa_chinensis	RchiOBHm_Chr1g0364361 RchiOBHm_Chr1g0364391 RchiOBHm_Chr5g0061761
rosa_laevigata	RLG00000027485 RLG00000027488 RLG00000035503
rosa_multiflora	Rmu_sc0003709.1_g000009 Rmu_sc0009489.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018970 Rroxscaffold_4G00292330 Rroxscaffold_4G00292360
rosa_rugosa	Rorug01G0315900 Rorug05G0343300
rosa_samantha	Rh1AG323700 Rh1AG324000 Rh1BG286400 Rh1BG286700 Rh1CG302800 Rh1CG303200 Rh1DG317900 Rh1DG318200 Rh5AG404400 Rh5BG417500 Rh5CG441900 Rh5DG431600
rosa_wichuraiana	Rw1G028680 Rw1G028710 Rw5G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AciI	CCGC	3 cut(s)	18, 183, 371
AcoI	YGGCCR	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	197, 268
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	62, 377
AluI	AGCT	2 cut(s)	62, 377
Alw26I	GTCTC	2 cut(s)	217, 353
AoxI	GGCC	2 cut(s)	157, 280
ApeKI	GCWGC	2 cut(s)	62, 206
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	49, 193
BccI	CCATC	3 cut(s)	141, 168, 338
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	217, 353
BfaI	CTAG	1 cut(s)	254
BglII	AGATCT	2 cut(s)	128, 272
BisI	GCNGC	3 cut(s)	63, 183, 207
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	3 cut(s)	64, 184, 208
Bme1390I	CCNGG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	42, 152
BseMII	CTCAG	2 cut(s)	119, 233
BseXI	GCAGC	2 cut(s)	49, 193
BshFI	GGCC	2 cut(s)	159, 282
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	217, 353
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	159, 282
Bsp143I	GATC	2 cut(s)	128, 272
Bsp1720I	GCTNAGC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	18, 183, 371
BspANI	GGCC	2 cut(s)	159, 282
BspCNI	CTCAG	2 cut(s)	118, 232
BspLI	GGNNCC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssMI	GATC	2 cut(s)	128, 272
Bst2UI	CCWGG	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	375, 388
BstDEI	CTNAG	4 cut(s)	14, 71, 105, 219
BstF5I	GGATG	2 cut(s)	42, 152
BstKTI	GATC	2 cut(s)	131, 275
BstMAI	GTCTC	2 cut(s)	217, 353
BstMBI	GATC	2 cut(s)	128, 272
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 383
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	49, 193
BstX2I	RGATCY	2 cut(s)	128, 272
BstYI	RGATCY	2 cut(s)	128, 272
BsuRI	GGCC	2 cut(s)	159, 282
BtsCI	GGATG	2 cut(s)	42, 152
Cac8I	GCNNGC	2 cut(s)	375, 388
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	2 cut(s)	308, 381
CviJI	RGCY	8 cut(s)	13, 62, 159, 166, 206, 282, 343, 377
CviKI_1	RGCY	8 cut(s)	13, 62, 159, 166, 206, 282, 343, 377
DdeI	CTNAG	4 cut(s)	14, 71, 105, 219
DpnI	GATC	2 cut(s)	130, 274
DpnII	GATC	2 cut(s)	128, 272
EaeI	YGGCCR	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	311, 384
FaiI	YATR	5 cut(s)	201, 263, 309, 382, 406
FatI	CATG	2 cut(s)	307, 380
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	63, 183, 207
FokI	GGATG	2 cut(s)	29, 159
Fsp4HI	GCNGC	3 cut(s)	63, 183, 207
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	3 cut(s)	63, 183, 207
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	159, 282
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	311, 384
HinfI	GANTC	4 cut(s)	50, 87, 139, 301
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	3 cut(s)	222, 245, 297
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	111, 225
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	209, 239, 251, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 383
HpyF3I	CTNAG	4 cut(s)	14, 71, 105, 219
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	311, 384
Kzo9I	GATC	2 cut(s)	128, 272
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	19, 60, 68, 92, 110, 117, 129, 156, 296
Lsp1109I	GCAGC	2 cut(s)	49, 193
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	116, 365
MalI	GATC	2 cut(s)	130, 274
MboI	GATC	2 cut(s)	128, 272
MflI	RGATCY	2 cut(s)	128, 272
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	59, 96
MnlI	CCTC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	39, 383
NdeII	GATC	2 cut(s)	128, 272
NlaIII	CATG	2 cut(s)	311, 384
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	139, 301
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	64, 184, 208
PleI	GAGTC	2 cut(s)	58, 95
PpsI	GAGTC	2 cut(s)	58, 95
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	128, 272
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	3 cut(s)	63, 183, 207
Sau3AI	GATC	2 cut(s)	128, 272
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	59, 96
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	5 cut(s)	64, 111, 123, 195, 379
SfaNI	GCATC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	3 cut(s)	18, 183, 371
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	142
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	246
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	139, 301
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	62, 206
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	314
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.