Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Forward (+)

29582308 .. 29584708

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGCCGAATTGGGGACTCAAGAATTGCTGTAACCATGAGCAAGTGGTGTTTCTCATTACTGTTTCTGTCTGCACCGTTGTTATACTTGCGGTGGAAGGGATTCAAGTTCATGCAGATGAAGGTGGAACCACACAAACCCGTGGTGGTGTATACTGGTTAATTCTGCCAGCTGGATATCTCGGTTCATCCTTTTGGGGGATGCTCTTGATTCTTGCATCTACAAATATCCTTACAGCACGGATAGCCGCTGGATGTTTTCTAGCTGCTCTATTTATTACACTCTTTATAGCTAAAAATTGGACACTTCGAGGACTTTGTATAGGATTCATTCTTTTCCTTGGTGTAATTTGGGCTCTGCAAGAAACAATAAAAGTTCGTATACTTCGGTATATTATTCTGTTTATAGGTGTAATGAACAGTTTGTTTTCGGTTTATGATATCTATGATGATCTGATATCCCGTAGAGTTCATTCTAGTGATGCTGAGAAGTTTGCAGAAGAGTGTCCTTGCTGTACTGGTTGTGGATGGGGTGTCATATGGGGCTTAATATCTTTCTTGTTTCTCTGTGGAGCCATGTACCTTGGTCTTGTGATTTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

202

Amino Acids

22.17

Weight (kDa)

5.86

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50B	PF13398	25 - 191	2.4e-38	Peptidase M50B-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	153, 382
AciI	CCGC	2 cut(s)	92, 249
AfaI	GTAC	2 cut(s)	517, 581
AfiI	CCNNNNNNNGG	2 cut(s)	14, 198
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	3 cut(s)	173, 266, 293
AluI	AGCT	3 cut(s)	173, 266, 293
ApeKI	GCWGC	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	522
BfaI	CTAG	2 cut(s)	263, 477
BisI	GCNGC	2 cut(s)	249, 267
BlsI	GCNGC	2 cut(s)	250, 268
BmiI	GGNNCC	3 cut(s)	6, 130, 574
BmsI	GCATC	3 cut(s)	192, 227, 472
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	142, 340, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 198
Bse1I	ACTGG	2 cut(s)	161, 523
BseDI	CCNNGG	3 cut(s)	142, 340, 583
BseGI	GGATG	4 cut(s)	188, 207, 260, 533
BseLI	CCNNNNNNNGG	2 cut(s)	14, 198
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	161, 523
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	14, 198
BsmFI	GGGAC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	2 cut(s)	92, 249
BspCNI	CTCAG	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	6, 130, 574
BsrI	ACTGG	2 cut(s)	161, 523
BssECI	CCNNGG	3 cut(s)	142, 340, 583
BssMI	GATC	1 cut(s)	451
BssNAI	GTATAC	2 cut(s)	154, 383
BssT1I	CCWWGG	2 cut(s)	340, 583
Bst1107I	GTATAC	2 cut(s)	154, 383
Bst4CI	ACNGT	3 cut(s)	64, 79, 422
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	4 cut(s)	188, 207, 260, 533
BstKTI	GATC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	253
BstZ17I	GTATAC	2 cut(s)	154, 383
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	4 cut(s)	188, 207, 260, 533
Cac8I	GCNNGC	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	516, 580
CviAII	CATG	3 cut(s)	38, 113, 577
CviJI	RGCY	9 cut(s)	7, 173, 248, 266, 293, 356, 546, 575, 602
CviKI_1	RGCY	9 cut(s)	7, 173, 248, 266, 293, 356, 546, 575, 602
CviQI	GTAC	2 cut(s)	516, 580
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	340, 583
Eco24I	GRGCYC	1 cut(s)	358
Eco32I	GATATC	3 cut(s)	179, 442, 459
EcoRV	GATATC	3 cut(s)	179, 442, 459
EcoT14I	CCWWGG	2 cut(s)	340, 583
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	340, 583
FaeI	CATG	3 cut(s)	41, 116, 580
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	37, 112, 576
FauNDI	CATATG	1 cut(s)	539
FblI	GTMKAC	2 cut(s)	153, 382
Fnu4HI	GCNGC	2 cut(s)	249, 267
FokI	GGATG	4 cut(s)	175, 214, 267, 540
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	249, 267
FspBI	CTAG	2 cut(s)	263, 477
GluI	GCNGC	2 cut(s)	249, 267
Hin1II	CATG	3 cut(s)	41, 116, 580
HinfI	GANTC	4 cut(s)	18, 103, 211, 327
Hpy166II	GTNNAC	2 cut(s)	154, 383
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	22, 208
Hpy8I	GTNNAC	2 cut(s)	154, 383
HpyAV	CCTTC	2 cut(s)	92, 116
HpyCH4III	ACNGT	3 cut(s)	64, 79, 422
HpyCH4V	TGCA	5 cut(s)	75, 116, 218, 361, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	41, 116, 580
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	2 cut(s)	4, 572
LpnPI	CCDG	5 cut(s)	142, 159, 183, 237, 504
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	192, 227, 472
MaeI	CTAG	2 cut(s)	263, 477
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	5 cut(s)	10, 25, 162, 298, 348
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	2 cut(s)	161, 548
MslI	CAYNNNNRTG	2 cut(s)	117, 477
MspA1I	CMGCKG	2 cut(s)	173, 251
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	3 cut(s)	41, 116, 580
NlaIV	GGNNCC	3 cut(s)	6, 130, 574
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	103, 211, 327
PkrI	GCNGC	2 cut(s)	250, 268
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	6, 130, 574
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	517, 581
RsaNI	GTAC	2 cut(s)	516, 580
RseI	CAYNNNNRTG	2 cut(s)	117, 477
SaqAI	TTAA	2 cut(s)	161, 548
SatI	GCNGC	2 cut(s)	249, 267
Sau3AI	GATC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	6 cut(s)	127, 175, 268, 295, 412, 585
SfaNI	GCATC	3 cut(s)	192, 227, 472
SmiMI	CAYNNNNRTG	2 cut(s)	117, 477
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	5 cut(s)	10, 25, 162, 298, 348
SsiI	CCGC	2 cut(s)	92, 249
SspMI	CTAG	2 cut(s)	263, 477
StyI	CCWWGG	2 cut(s)	340, 583
TaaI	ACNGT	3 cut(s)	64, 79, 422
TaqI	TCGA	1 cut(s)	310
TasI	AATT	5 cut(s)	10, 25, 162, 298, 348
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	103, 211, 327
Tru1I	TTAA	2 cut(s)	161, 548
Tru9I	TTAA	2 cut(s)	161, 548
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	6 cut(s)	101, 135, 177, 319, 431, 461
TspGWI	ACGGA	1 cut(s)	256
XmiI	GTMKAC	2 cut(s)	153, 382
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	2 cut(s)	263, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.