Rorug02G0260900

Peptidase M50B-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
27374927 .. 27375136
210 bp
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UTR
Exon/CDS
Intron
Rorug02G0260900.1

Sequence Viewer

Length: 210 bp
ATGGATCTGTTCATTGACGGTGGGATTGGAAACCCTAGATGGAGAATAACAGGGTTTTATGGCTATGCAAGTACGACTAAACGTGATCGTTCATGGCAGCTCTTACGTGATTTGCGAGATCTGGCCGTACTGCCATGGGTTGTGATTGGGGATTTCAACGAAATCCTCAATAACAGCGAGAAAATAGATGGTCCGATGAGGGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.97

Weight (kDa)

5.27

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 123
AfaI GTAC 2 cut(s) 73, 129
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 33, 182
BceAI ACGGC 1 cut(s) 110
BfaI CTAG 1 cut(s) 36
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 125
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 4, 85, 118
Bsp19I CCATGG 1 cut(s) 134
BspANI GGCC 1 cut(s) 125
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 3 cut(s) 4, 85, 118
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 134
BstKTI GATC 3 cut(s) 7, 88, 121
BstMBI GATC 3 cut(s) 4, 85, 118
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 4, 118
BstYI RGATCY 2 cut(s) 4, 118
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 72, 128
CviAII CATG 2 cut(s) 93, 135
CviJI RGCY 3 cut(s) 63, 100, 125
CviKI_1 RGCY 3 cut(s) 63, 100, 125
CviQI GTAC 2 cut(s) 72, 128
DpnI GATC 3 cut(s) 6, 87, 120
DpnII GATC 3 cut(s) 4, 85, 118
EaeI YGGCCR 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 2 cut(s) 96, 138
FaiI YATR 4 cut(s) 60, 66, 94, 136
FatI CATG 2 cut(s) 92, 134
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 2 cut(s) 96, 138
Hpy188I TCNGA 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 82, 106
HpyCH4V TGCA 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 82, 106
Hsp92II CATG 2 cut(s) 96, 138
Kzo9I GATC 3 cut(s) 4, 85, 118
LpnPI CCDG 2 cut(s) 36, 107
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 82, 106
MalI GATC 3 cut(s) 6, 87, 120
MboI GATC 3 cut(s) 4, 85, 118
MflI RGATCY 2 cut(s) 4, 118
MnlI CCTC 2 cut(s) 176, 192
NcoI CCATGG 1 cut(s) 134
NdeII GATC 3 cut(s) 4, 85, 118
NlaIII CATG 2 cut(s) 96, 138
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PkrI GCNGC 1 cut(s) 99
Ppu21I YACGTR 1 cut(s) 107
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 4, 118
RsaI GTAC 2 cut(s) 73, 129
RsaNI GTAC 2 cut(s) 72, 128
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 4, 85, 118
Sau96I GGNCC 1 cut(s) 191
SetI ASST 3 cut(s) 85, 102, 109
SinI GGWCC 1 cut(s) 191
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 2 cut(s) 85, 109
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 191
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.