Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

27374615 .. 27374923

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0260800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCGAGGTTTTCGAGACGCTCTAGGATATGGACATTTACTCGATCTAGGGTTTCAGGGCCCTCAATCCACATGGTGGAATTCCAATACCCAACTTCGGCTTGACCGAGCGGTTTGTACACCTTCCTGGTTCGATATCTATGGCCATGCTAGGTTGCGCCATTTACCACCAAGTGATTCGGACCATGTCCCCATCCTGCTTCATGCGAGTATTGCACAGTTGTTTGAGCGGAGGAATTATCACAGATTTAAATTTGAGTCGTACTGGCTACAGAATAGAGAATGTGATGATGTGGTGAATGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

102

Amino Acids

12.0

Weight (kDa)

7.01

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccBSI	CCGCTC	2 cut(s)	110, 229
AciI	CCGC	2 cut(s)	110, 229
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	79, 251
AdeI	CACNNNGTG	2 cut(s)	75, 173
AfaI	GTAC	2 cut(s)	118, 263
AfiI	CCNNNNNNNGG	2 cut(s)	75, 96
AjnI	CCWGG	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	2 cut(s)	58, 142
ApaI	GGGCCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	79, 251
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	58, 59, 181
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	23, 47, 150
BfmI	CTRYAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	58, 59, 181
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 96
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	75, 96
BseNI	ACTGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	2 cut(s)	60, 144
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	75, 96
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	60, 144
Bsp120I	GGGCCC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	110, 229
BspANI	GGCC	2 cut(s)	60, 144
BspLI	GGNNCC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	110, 229
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	60, 144
BtsCI	GGATG	1 cut(s)	192
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	58, 59, 181
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	117, 262
CviAII	CATG	4 cut(s)	72, 146, 185, 203
CviJI	RGCY	4 cut(s)	60, 100, 144, 268
CviKI_1	RGCY	4 cut(s)	60, 100, 144, 268
CviQI	GTAC	2 cut(s)	117, 262
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraI	TTTAAA	1 cut(s)	250
DraIII	CACNNNGTG	2 cut(s)	75, 173
EaeI	YGGCCR	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	181
EcoO109I	RGGNCCY	2 cut(s)	58, 59
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	4 cut(s)	75, 149, 188, 206
FaiI	YATR	6 cut(s)	30, 73, 141, 147, 186, 204
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	4 cut(s)	71, 145, 184, 202
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	3 cut(s)	23, 47, 150
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	60, 144
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	75, 149, 188, 206
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	176, 257
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	4 cut(s)	75, 149, 188, 206
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	5 cut(s)	41, 112, 139, 209, 250
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	23, 47, 150
MalI	GATC	1 cut(s)	45
MbiI	CCGCTC	2 cut(s)	110, 229
MboI	GATC	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	3 cut(s)	79, 235, 251
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	2 cut(s)	72, 225
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	75, 149, 188, 206
NlaIV	GGNNCC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	60
PspOMI	GGGCCC	1 cut(s)	58
PspPI	GGNCC	3 cut(s)	58, 59, 181
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	118, 263
RsaNI	GTAC	2 cut(s)	117, 262
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	3 cut(s)	58, 59, 181
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	3 cut(s)	10, 124, 155
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	181
SmiI	ATTTAAAT	1 cut(s)	250
Sse9I	AATT	3 cut(s)	79, 235, 251
SsiI	CCGC	2 cut(s)	110, 229
SspMI	CTAG	3 cut(s)	23, 47, 150
StyD4I	CCNGG	1 cut(s)	125
SwaI	ATTTAAAT	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	13, 42, 132
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	79, 235, 251
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	79, 251
XspI	CTAG	3 cut(s)	23, 47, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.