Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15509448 .. 15514628

Gene Structure 5181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCCAATTGGGAGCTGAAGAGTTGTTGCAAGCATGACCAGGTCGTATTCTTAGCGACTATTGGAGTCTTCACCGTTGTGATCCTCGCGCTGTGGAGGACAATAATACTCACACCTTTTAAGCTCATCACGGTGTTCTTGCATGAAGCAAGCCATGCAATTGCTTGCATACTCACATGTGGCAAGGTGGAAGGTATCCAGGTTCACGCAAATGAGGGTGGGGTCACACAAACACGTGGCGGTATATATTGTTTGATCTTACCTGCAGGATATCTAGGTTCATCATTTTGGGGAATGGCTTTGATACTTGCTTCCACAAATCTCCTAACTGCTCGAATTGCTGCTGGTTGTTTGGGTGTTGCTCTGCTTGTTGTGCTTTTTGTGGCAAAAAATTGGACACTTCGGGGACTTTGTATTGGATTCATTGTATTCCTTGCTATAATTTGGGTTCTGCAAGAAACAACAAAAGTCCGTATTCTTCGCTACGTTATTCTCTTTATTGGTGTGATGAACAGTTTGTTTTCAGTTTACGATATTTATGATGATTTAATATCTAGAAGAGTCAACTCCAGTGATGCTGAGAAGTTTGCAGAAGTTTGCCCCTGCCCCTGTAATGGGGTTGGATGGGGAGTGATATGGGGACTGATATCATTTATCTTTCTTTCTGCGTCGGTGTACCTAGGGCTCGTCATTTTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

234

Amino Acids

25.49

Weight (kDa)

8.34

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	271
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	2 cut(s)	614, 615
AflIII	ACRYGT	2 cut(s)	176, 233
AjnI	CCWGG	2 cut(s)	39, 198
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	16, 124
AluI	AGCT	2 cut(s)	16, 124
AlwI	GGATC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	341
AspA2I	CCTAGG	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	618
BciT130I	CCWGG	2 cut(s)	41, 200
BciVI	GTATCC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	275, 555, 680
BfmI	CTRYAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	342
BlnI	CCTAGG	1 cut(s)	679
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	41, 200
BmrFI	CCNGG	2 cut(s)	41, 200
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 615
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	41, 200
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	1 cut(s)	629
BseLI	CCNNNNNNNGG	2 cut(s)	614, 615
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	570
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	89
BslFI	GGGAC	2 cut(s)	420, 654
BslI	CCNNNNNNNGG	2 cut(s)	614, 615
BsmFI	GGGAC	2 cut(s)	420, 654
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	2 cut(s)	81, 255
BspACI	CCGC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	2 cut(s)	81, 255
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	2 cut(s)	41, 200
Bst4CI	ACNGT	3 cut(s)	76, 133, 515
Bst6I	CTCTTC	2 cut(s)	14, 553
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	32, 151, 166
BstDEI	CTNAG	2 cut(s)	52, 579
BstF5I	GGATG	1 cut(s)	629
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	84, 258
BstMBI	GATC	2 cut(s)	81, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 338, 373
BstNI	CCWGG	2 cut(s)	41, 200
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	39, 198
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	32, 151, 166
CfoI	GCGC	1 cut(s)	91
CseI	GACGC	1 cut(s)	657
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	4 cut(s)	35, 143, 155, 177
CviJI	RGCY	5 cut(s)	16, 124, 153, 299, 685
CviKI_1	RGCY	5 cut(s)	16, 124, 153, 299, 685
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	2 cut(s)	52, 579
DpnI	GATC	2 cut(s)	83, 257
DpnII	GATC	2 cut(s)	81, 255
Eam1104I	CTCTTC	2 cut(s)	14, 553
EarI	CTCTTC	2 cut(s)	14, 553
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	687
Eco32I	GATATC	2 cut(s)	272, 648
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	39, 198
EcoRV	GATATC	2 cut(s)	272, 648
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	4 cut(s)	38, 146, 158, 180
FaqI	GGGAC	2 cut(s)	420, 654
FatI	CATG	4 cut(s)	34, 142, 154, 176
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	1 cut(s)	636
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	3 cut(s)	275, 555, 680
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	553
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	38, 146, 158, 180
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	66, 420, 561
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	4 cut(s)	205, 529, 565, 676
Hpy188III	TCNNGA	2 cut(s)	555, 699
Hpy8I	GTNNAC	4 cut(s)	205, 529, 565, 676
Hpy99I	CGWCG	1 cut(s)	673
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	3 cut(s)	76, 133, 515
HpyCH4IV	ACGT	2 cut(s)	235, 486
HpyCH4V	TGCA	7 cut(s)	30, 142, 158, 168, 266, 454, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 338, 373
HpyF3I	CTNAG	2 cut(s)	52, 579
HpySE526I	ACGT	2 cut(s)	235, 486
Hsp92II	CATG	4 cut(s)	38, 146, 158, 180
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	81, 255
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	565
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	3 cut(s)	275, 555, 680
MaeII	ACGT	2 cut(s)	235, 486
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	83, 257
MboI	GATC	2 cut(s)	81, 255
MboII	GAAGA	4 cut(s)	31, 61, 470, 570
MfeI	CAATTG	2 cut(s)	7, 159
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	5 cut(s)	7, 159, 336, 391, 441
MlyI	GAGTC	2 cut(s)	75, 570
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	3 cut(s)	90, 95, 208
MseI	TTAA	2 cut(s)	120, 548
MslI	CAYNNNNRTG	3 cut(s)	77, 131, 210
MspR9I	CCNGG	2 cut(s)	41, 200
MunI	CAATTG	2 cut(s)	7, 159
MvaI	CCWGG	2 cut(s)	41, 200
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	155, 338, 373
NdeII	GATC	2 cut(s)	81, 255
NlaIII	CATG	4 cut(s)	38, 146, 158, 180
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	180
OliI	CACNNNNGTG	1 cut(s)	77
PciI	ACATGT	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	2 cut(s)	74, 569
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	2 cut(s)	74, 569
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	39, 198
PspCI	CACGTG	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	39, 198
PstI	CTGCAG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	3 cut(s)	77, 131, 210
SaqAI	TTAA	2 cut(s)	120, 548
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	81, 255
SbfI	CCTGCAGG	1 cut(s)	268
SchI	GAGTC	2 cut(s)	75, 570
ScrFI	CCNGG	2 cut(s)	41, 200
SdaI	CCTGCAGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	687
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	264
SmiMI	CAYNNNNRTG	3 cut(s)	77, 131, 210
Sse8387I	CCTGCAGG	1 cut(s)	268
Sse9I	AATT	5 cut(s)	7, 159, 336, 391, 441
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	3 cut(s)	275, 555, 680
StyD4I	CCNGG	2 cut(s)	39, 198
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	3 cut(s)	76, 133, 515
TaiI	ACGT	2 cut(s)	238, 489
TaqI	TCGA	1 cut(s)	334
TasI	AATT	5 cut(s)	7, 159, 336, 391, 441
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	2 cut(s)	120, 548
Tru9I	TTAA	2 cut(s)	120, 548
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	159, 270, 412, 524
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	1 cut(s)	180
XmaJI	CCTAGG	1 cut(s)	679
XspI	CTAG	3 cut(s)	275, 555, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.