Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

12253318 .. 12258779

Gene Structure 5462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13690.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCGAATTGGGCGCTCAAGAGTTGTTGCAAGCATGACCAGGTCATGTTCTTAGCGACTATCGGAGTCTTTACCGTTGTCATCCTAGCGCTATGGAGGACAGTACTACTCACGCCTTTTAAGCTCATTACAGTTTTCCTGCATGAAGCAAGCCATGCGATCGCTTGTATACTGACATGTGGCAAGGTTGAGGGTATCCAGGTTCACGCAAATGAGGGCGGGGCCACACAAACACGTGGTGGCATATATTGGTTCATCTTGCCTGCAGGATATCTAGGTTCATCATTTTGGGGAATGGCATTGATACTTGCGTCAACGAATCTCCTTACTGCTAGAATTGCTGCTGGTTGTTTAGGTGTTGCCCTGCTTGTTGTGCTTTTTGTGGCCAAAAATTGGACTCTTCGAGGACTTTGTTTAGGATTTATCATATTCCTTGCAGTAGTATGGGTTCTGCAAGAACTCACGAAAATCCATATTCTTCGCTATGTCATTCTCTTTATTGGTATACTCTTACCTTCCGGTGTGATGAACAGTTTGTTTTCAGTTTACGATATTTATGATGATTTAATATCTAGAAGGGTAAATTCCAGTGATGCGGAAAAGTTTGCAGAAGTTTGCCCTTGTCCCTGCAATGGGGTTGGATGGGGAGTCATATGGGGATTGATATCTTTCACATTTCTTTGTGCATCTGTATATCTTGGACTTGTCATCTTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

240

Amino Acids

26.12

Weight (kDa)

8.34

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50B	PF13398	35 - 196	6.5e-41	Peptidase M50B-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccI	GTMKAC	2 cut(s)	169, 505
AciI	CCGC	2 cut(s)	219, 596
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	583
AcvI	CACGTG	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	105
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	393, 632, 633
AflIII	ACRYGT	2 cut(s)	176, 233
AjnI	CCWGG	2 cut(s)	39, 198
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	2 cut(s)	222, 384
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	583
AsiSI	GCGATCGC	1 cut(s)	162
AspLEI	GCGC	2 cut(s)	16, 91
AspS9I	GGNCC	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BalI	TGGCCA	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	636
BciT130I	CCWGG	2 cut(s)	41, 200
BciVI	GTATCC	1 cut(s)	206
BfaI	CTAG	4 cut(s)	86, 275, 333, 573
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	2 cut(s)	17, 92
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmcAI	AGTACT	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	41, 200
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	41, 200
BmsI	GCATC	2 cut(s)	583, 695
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	664
BsaWI	WCCGGW	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 632, 633
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	637
Bse8I	GATNNNNATC	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	41, 200
BseGI	GGATG	2 cut(s)	81, 647
BseJI	GATNNNNATC	1 cut(s)	664
BseLI	CCNNNNNNNGG	3 cut(s)	393, 632, 633
BseMI	GCAATG	1 cut(s)	637
BseNI	ACTGG	1 cut(s)	588
BseXI	GCAGC	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	224, 386
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	393, 632, 633
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	224, 386
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	219, 596
BspANI	GGCC	2 cut(s)	224, 386
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	588
BssMI	GATC	1 cut(s)	159
BssNAI	GTATAC	2 cut(s)	170, 506
Bst1107I	GTATAC	2 cut(s)	170, 506
Bst2UI	CCWGG	2 cut(s)	41, 200
Bst4CI	ACNGT	4 cut(s)	76, 103, 133, 533
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	32, 151, 264
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	81, 647
BstH2I	RGCGCY	2 cut(s)	17, 92
BstHHI	GCGC	2 cut(s)	16, 91
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 155, 338, 373
BstNI	CCWGG	2 cut(s)	41, 200
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	39, 198
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	328
BstZ17I	GTATAC	2 cut(s)	170, 506
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	224, 386
BtsCI	GGATG	2 cut(s)	81, 647
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	3 cut(s)	32, 151, 264
CfoI	GCGC	2 cut(s)	16, 91
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	5 cut(s)	35, 46, 143, 155, 177
CviJI	RGCY	4 cut(s)	124, 153, 224, 386
CviKI_1	RGCY	4 cut(s)	124, 153, 224, 386
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco32I	GATATC	2 cut(s)	272, 666
Eco47III	AGCGCT	1 cut(s)	90
Eco72I	CACGTG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	39, 198
EcoRV	GATATC	2 cut(s)	272, 666
FaeI	CATG	5 cut(s)	38, 49, 146, 158, 180
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	5 cut(s)	34, 45, 142, 154, 176
FauI	CCCGC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	653
FblI	GTMKAC	2 cut(s)	169, 505
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	68, 654
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	4 cut(s)	86, 275, 333, 573
GlaI	GCGC	2 cut(s)	15, 90
GluI	GCNGC	1 cut(s)	342
HaeII	RGCGCY	2 cut(s)	17, 92
HaeIII	GGCC	2 cut(s)	224, 386
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	2 cut(s)	16, 91
Hin1II	CATG	5 cut(s)	38, 49, 146, 158, 180
Hin6I	GCGC	2 cut(s)	14, 89
HinP1I	GCGC	2 cut(s)	14, 89
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	4 cut(s)	66, 319, 397, 648
HpaII	CCGG	1 cut(s)	519
Hpy166II	GTNNAC	5 cut(s)	170, 205, 315, 506, 547
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	4 cut(s)	19, 463, 573, 717
Hpy8I	GTNNAC	5 cut(s)	170, 205, 315, 506, 547
HpyAV	CCTTC	2 cut(s)	525, 570
HpyCH4III	ACNGT	4 cut(s)	76, 103, 133, 533
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	8 cut(s)	30, 142, 266, 437, 454, 608, 630, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 155, 338, 373
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	5 cut(s)	38, 49, 146, 158, 180
HspAI	GCGC	2 cut(s)	14, 89
Kzo9I	GATC	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	583, 695
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	4 cut(s)	86, 275, 333, 573
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	392, 470
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	4 cut(s)	7, 336, 391, 583
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	3 cut(s)	75, 391, 657
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	4 cut(s)	90, 184, 208, 398
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	2 cut(s)	120, 566
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	2 cut(s)	41, 200
MvaI	CCWGG	2 cut(s)	41, 200
MwoI	GCNNNNNNNGC	4 cut(s)	121, 155, 338, 373
NdeI	CATATG	1 cut(s)	653
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	5 cut(s)	38, 49, 146, 158, 180
NlaIV	GGNNCC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	180
PciI	ACATGT	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	319
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	343
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	3 cut(s)	74, 391, 656
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	3 cut(s)	74, 391, 656
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	39, 198
PspCI	CACGTG	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	39, 198
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	222
PsrI	GAACNNNNNNTAC	2 cut(s)	432, 464
PstI	CTGCAG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	162
RgaI	GCGATCGC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	120, 566
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	222
SbfI	CCTGCAGG	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	105
SchI	GAGTC	3 cut(s)	75, 391, 657
ScrFI	CCNGG	2 cut(s)	41, 200
SdaI	CCTGCAGG	1 cut(s)	268
SetI	ASST	8 cut(s)	45, 126, 189, 204, 238, 280, 358, 517
SexAI	ACCWGGT	1 cut(s)	39
SfaAI	GCGATCGC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	583, 695
SfcI	CTRYAG	1 cut(s)	264
SgfI	GCGATCGC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse8387I	CCTGCAGG	1 cut(s)	268
Sse9I	AATT	4 cut(s)	7, 336, 391, 583
SsiI	CCGC	2 cut(s)	219, 596
SspMI	CTAG	4 cut(s)	86, 275, 333, 573
StyD4I	CCNGG	2 cut(s)	39, 198
TaaI	ACNGT	4 cut(s)	76, 103, 133, 533
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	403
TasI	AATT	4 cut(s)	7, 336, 391, 583
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	120, 566
Tru9I	TTAA	2 cut(s)	120, 566
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	159, 244, 270, 542
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	583
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	2 cut(s)	169, 505
XspI	CTAG	4 cut(s)	86, 275, 333, 573
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.