Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Forward (+)

5140512 .. 5144200

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGCCGAATTGGGGACTGAAGAATTGCTGTAACCATGACCAAGTGGTGTTTCTCATTACTGTTTCTGTCTGCACTGTTGTTATACTTGCGCTTTGGAGGACAATACTGCTGAGACCGTTTAAGCTTGTCACTGTCTTTCTTCATGAGGCTAGCCATGCTATCGCTTGTAAACTAACATGTGGTCATGTGGAAGGAATGCAAGTTCATGCAGATGAAGGTGGAGCAACACAAACCCGTGGTGGTGTATACTGGTTAATTCTGCCAGCTGGATATCTAGGTTCATCCTTTTGGGGGATGCTCTTGATTCTTGCATCTACAAATCTTCTTACAGCACGGATAGCCGCTGGATGTTTTCTAGCTGCTCTATTTATTACACTCTTTATAGCTAAAAATTGGACACTTCGAGGACTTTGTATAGGATTCATTCTGTTCCTTGGTGTAATTTGGGCTCTGCAAGAAACAACAAAAGTTCGTGTACTTCGGTATATTATTCTGTTTATAGGTGTGATGAACAGCTTATTTTCAGTATATGATATCTATGATGATCTGATATCCCGTAGAGTTCATTCTAGTGATGCTGAGAAGTTTGCAGTAGAGTGTCCTTGCTGTACTGGTTGTGGATGGGGTGTCATATGGAAAACATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

216

Amino Acids

23.99

Weight (kDa)

8.3

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50B	PF13398	24 - 213	2.6e-52	Peptidase M50B-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	480, 613
AfiI	CCNNNNNNNGG	2 cut(s)	14, 294
AflIII	ACRYGT	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	5 cut(s)	127, 269, 362, 389, 519
AluI	AGCT	5 cut(s)	127, 269, 362, 389, 519
Alw26I	GTCTC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	94
AsuNHI	GCTAGC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	4 cut(s)	153, 278, 359, 573
BisI	GCNGC	2 cut(s)	345, 363
BlsI	GCNGC	2 cut(s)	346, 364
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	288, 323, 568
BmtI	GCTAGC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	238, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 294
Bse1I	ACTGG	2 cut(s)	257, 619
BseDI	CCNNGG	2 cut(s)	238, 436
BseGI	GGATG	4 cut(s)	284, 303, 356, 629
BseLI	CCNNNNNNNGG	2 cut(s)	14, 294
BseMII	CTCAG	2 cut(s)	104, 573
BseNI	ACTGG	2 cut(s)	257, 619
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	14, 294
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	105, 574
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	257, 619
BssECI	CCNNGG	2 cut(s)	238, 436
BssMI	GATC	1 cut(s)	547
BssNAI	GTATAC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	250
Bst4CI	ACNGT	4 cut(s)	64, 79, 120, 136
BstC8I	GCNNGC	2 cut(s)	154, 267
BstDEI	CTNAG	2 cut(s)	113, 582
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	284, 303, 356, 629
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 341
BstNSI	RCATGY	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	4 cut(s)	284, 303, 356, 629
BtsIMutI	CAGTG	2 cut(s)	75, 132
Cac8I	GCNNGC	2 cut(s)	154, 267
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	479, 612
CviAII	CATG	6 cut(s)	38, 146, 158, 180, 188, 209
CviQI	GTAC	2 cut(s)	479, 612
DdeI	CTNAG	2 cut(s)	113, 582
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	3 cut(s)	275, 538, 555
Eco57I	CTGAAG	1 cut(s)	41
EcoRV	GATATC	3 cut(s)	275, 538, 555
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	6 cut(s)	41, 149, 161, 183, 191, 212
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	6 cut(s)	37, 145, 157, 179, 187, 208
FauNDI	CATATG	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	345, 363
FokI	GGATG	4 cut(s)	271, 310, 363, 636
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	345, 363
FspBI	CTAG	4 cut(s)	153, 278, 359, 573
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	345, 363
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	6 cut(s)	41, 149, 161, 183, 191, 212
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	307, 423
Hpy166II	GTNNAC	3 cut(s)	173, 250, 479
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	2 cut(s)	146, 304
Hpy8I	GTNNAC	3 cut(s)	173, 250, 479
HpyAV	CCTTC	2 cut(s)	188, 212
HpyCH4III	ACNGT	4 cut(s)	64, 79, 120, 136
HpyCH4V	TGCA	6 cut(s)	75, 202, 212, 314, 457, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 341
HpyF3I	CTNAG	2 cut(s)	113, 582
Hsp92II	CATG	6 cut(s)	41, 149, 161, 183, 191, 212
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	2 cut(s)	4, 224
LpnPI	CCDG	5 cut(s)	238, 255, 279, 333, 600
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	3 cut(s)	288, 323, 568
MaeI	CTAG	4 cut(s)	153, 278, 359, 573
MaeIII	GTNAC	2 cut(s)	32, 130
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	3 cut(s)	34, 134, 317
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	5 cut(s)	10, 25, 258, 394, 444
MnlI	CCTC	3 cut(s)	93, 142, 401
MseI	TTAA	2 cut(s)	123, 257
MslI	CAYNNNNRTG	2 cut(s)	213, 573
MspA1I	CMGCKG	2 cut(s)	269, 347
Mva1269I	GAATGC	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	158, 341
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	1 cut(s)	547
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	6 cut(s)	41, 149, 161, 183, 191, 212
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	183
PagI	TCATGA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	179
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	307, 423
PkrI	GCNGC	2 cut(s)	346, 364
PscI	ACATGT	1 cut(s)	179
PsiI	TTATAA	1 cut(s)	649
PspN4I	GGNNCC	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	480, 613
RsaNI	GTAC	2 cut(s)	479, 612
RseI	CAYNNNNRTG	2 cut(s)	213, 573
SaqAI	TTAA	2 cut(s)	123, 257
SatI	GCNGC	2 cut(s)	345, 363
Sau3AI	GATC	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	8 cut(s)	129, 223, 271, 283, 364, 391, 508, 521
SfaNI	GCATC	3 cut(s)	288, 323, 568
SmiMI	CAYNNNNRTG	2 cut(s)	213, 573
Sse9I	AATT	5 cut(s)	10, 25, 258, 394, 444
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	4 cut(s)	153, 278, 359, 573
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	4 cut(s)	64, 79, 120, 136
TaqI	TCGA	1 cut(s)	406
TasI	AATT	5 cut(s)	10, 25, 258, 394, 444
TatI	WGTACW	2 cut(s)	478, 611
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	307, 423
Tru1I	TTAA	2 cut(s)	123, 257
Tru9I	TTAA	2 cut(s)	123, 257
TscAI	CASTG	2 cut(s)	82, 139
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	7 cut(s)	134, 197, 231, 273, 415, 527, 557
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	82, 139
XceI	RCATGY	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	153, 278, 359, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.