Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

42105181 .. 42109333

Gene Structure 4153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCGAATTGGGAGCTGAAGAGTTGTTGCAAGCATGACCAGGTCATGTTCTTAGCGACTATTGGAGTCTATACCGTGGTGATCCTAGCGCTATGGAGGACAATACTACTCACGCCTTTTAAGCTCATTACAGTTTTCCTTCATGAAGCAAGCCATGCAATTGCTTGTATACTCACATGTGGCAAGGTTGAGGGTATCCAGGTTCATGCAAATGAGGGTGGGGCGACGCAAACACGTGGTGGTATATATTGGCTGATTTTGCCTGCAGGATATCTGGGTTCATCATTTTGGGGAATGGCATTGATACTTGCGTCAACAAATCTCCTTACTGCTAGAATTGCTGCTGGTTGTTTCGGCGTTGCCCTGCTTGTTGTGCTTTTTCTGGCAAAAAATTGGACACTTCGAGGACTTTGTATTGGATTTATCATATTCCTTGCTGTAGTATGGGTTCTGCAAGAACTTACGAAAGTCCGAATTCTTCGCTATGTCATTCTCTTTATTGGTATACTCTTATCTTGTGGTACCTTTACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

9.1

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50B	PF13398	23 - 174	8.8e-39	Peptidase M50B-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	169, 505
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	523
AfeI	AGCGCT	1 cut(s)	90
AflIII	ACRYGT	2 cut(s)	176, 233
AjnI	CCWGG	2 cut(s)	39, 198
AluBI	AGCT	2 cut(s)	16, 124
AluI	AGCT	2 cut(s)	16, 124
AlwI	GGATC	1 cut(s)	76
Aor51HI	AGCGCT	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	474
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BanI	GGYRCC	1 cut(s)	521
BbrPI	CACGTG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	328
BciT130I	CCWGG	2 cut(s)	41, 200
BciVI	GTATCC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	86, 333
BfmI	CTRYAG	2 cut(s)	264, 438
BfoI	RGCGCY	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	41, 200
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	41, 200
BsaAI	YACGTR	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	41, 200
BseDI	CCNNGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	521
Bsp143I	GATC	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	523
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	81
BssNAI	GTATAC	2 cut(s)	170, 506
Bst1107I	GTATAC	2 cut(s)	170, 506
Bst2UI	CCWGG	2 cut(s)	41, 200
Bst4CI	ACNGT	2 cut(s)	76, 133
Bst6I	CTCTTC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	32, 151, 264
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 155, 259, 338, 373
BstNI	CCWGG	2 cut(s)	41, 200
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	39, 198
BstSFI	CTRYAG	2 cut(s)	264, 438
BstV1I	GCAGC	1 cut(s)	328
BstZ17I	GTATAC	2 cut(s)	170, 506
BsuI	GTATCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	32, 151, 264
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	91
CseI	GACGC	2 cut(s)	235, 300
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	6 cut(s)	35, 46, 143, 155, 177, 206
CviJI	RGCY	4 cut(s)	16, 124, 153, 253
CviKI_1	RGCY	4 cut(s)	16, 124, 153, 253
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DraIII	CACNNNGTG	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	39, 198
EcoRV	GATATC	1 cut(s)	272
FaeI	CATG	6 cut(s)	38, 49, 146, 158, 180, 209
FatI	CATG	6 cut(s)	34, 45, 142, 154, 176, 205
FblI	GTMKAC	2 cut(s)	169, 505
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	86, 333
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	92
HgaI	GACGC	2 cut(s)	235, 300
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	6 cut(s)	38, 49, 146, 158, 180, 209
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	3 cut(s)	170, 315, 506
Hpy188I	TCNGA	2 cut(s)	473, 536
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	3 cut(s)	170, 315, 506
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	76, 133
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	30, 158, 209, 266, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 155, 259, 338, 373
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	6 cut(s)	38, 49, 146, 158, 180, 209
HspAI	GCGC	1 cut(s)	89
KpnI	GGTACC	1 cut(s)	525
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	1 cut(s)	328
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	2 cut(s)	86, 333
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	31, 470
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	5 cut(s)	7, 159, 336, 391, 474
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	90, 184, 208, 398
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	41, 200
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	41, 200
MwoI	GCNNNNNNNGC	5 cut(s)	121, 155, 259, 338, 373
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	6 cut(s)	38, 49, 146, 158, 180, 209
NlaIV	GGNNCC	1 cut(s)	523
NspI	RCATGY	1 cut(s)	180
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	74
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	39, 198
PspCI	CACGTG	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	39, 198
PspN4I	GGNNCC	1 cut(s)	523
PsrI	GAACNNNNNNTAC	2 cut(s)	432, 464
PstI	CTGCAG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	81
SbfI	CCTGCAGG	1 cut(s)	268
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	41, 200
SdaI	CCTGCAGG	1 cut(s)	268
SetI	ASST	8 cut(s)	18, 45, 126, 189, 204, 238, 527, 533
SexAI	ACCWGGT	1 cut(s)	39
SfcI	CTRYAG	2 cut(s)	264, 438
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse8387I	CCTGCAGG	1 cut(s)	268
Sse9I	AATT	5 cut(s)	7, 159, 336, 391, 474
SspMI	CTAG	2 cut(s)	86, 333
StyD4I	CCNGG	2 cut(s)	39, 198
TaaI	ACNGT	2 cut(s)	76, 133
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	7, 159, 336, 391, 474
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	131, 159, 194, 270
Tth111I	GACNNNGTC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	2 cut(s)	169, 505
XspI	CTAG	2 cut(s)	86, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.