Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

17288978 .. 17292242

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G222700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACTTGATTGACTGGAGGCCAAATTGGCAACTCAGAAGATGCTGCAACCGCGACCAAGTGACCTTCCTCATCTCTGTTGCTGTCTGCACTGTCGTTATACTTGTGCTGTGGAGGACAGTACTGATGACACCATTTAAGCTTATAACTGTGTTTCTTCATGAGGTGAGCCATGCATTGGCTTGTATGCTTACATGTGGTAAGATTAGTTTGCAGGTGGAAGGGATTAAAGTTCATGCAGATGAAGGAGGAGTCACACAAACTCGTGGTGGCATATACTGGCTAATTTTGCCGGCTGGATATCTTGGTTCATCCTTTTGGGGGATGGTATTGATTCTTGCATCCACAAAACATCTTGCTACACAAGTAGCTGCTGGCTGTTTCATCGTTGCCCTATTTGTTGTACTATTTTTAGCTAAAAATTGGACACTTCGAGGACTTTGTATAGGATTCATTATTTTATTTGCTGGAATTTGGTATCTGCAAGAAACAACGCCAGTTCGTATTCTAAGGGAAATAATTCTGTTTACTGGTGTAATGAACAGCTTGTTTTCAGTTTATGATATCTATGATGATCTTATATCTCGCAGAGTTAATTCTAGTGATGCCGAGAGATTTGCAGAAGAGTGTCCATGCTGCACTGGTTGTGGATGGGGTGTCATTTGGGCGTTCATATCTTTCTTCTTTCTCTGTGGATCCATGTACCTTGCTCTTGTGGTTTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

243

Amino Acids

27.16

Weight (kDa)

7.48

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	690, 703
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	3 cut(s)	123, 405, 704
AfiI	CCNNNNNNNGG	2 cut(s)	178, 321
AflIII	ACRYGT	1 cut(s)	194
AluBI	AGCT	4 cut(s)	142, 371, 416, 546
AluI	AGCT	4 cut(s)	142, 371, 416, 546
AlwI	GGATC	2 cut(s)	690, 703
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	45, 371, 636
ApoI	RAATTY	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	695
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	32, 358, 623
BccI	CCATC	2 cut(s)	319, 645
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BfaI	CTAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	3 cut(s)	46, 372, 637
BlsI	GCNGC	3 cut(s)	47, 373, 638
BmcAI	AGTACT	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	697
BmsI	GCATC	3 cut(s)	32, 350, 595
BpmI	CTGGAG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 321
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	5 cut(s)	20, 284, 497, 535, 646
BseGI	GGATG	4 cut(s)	311, 330, 341, 656
BseLI	CCNNNNNNNGG	2 cut(s)	178, 321
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	5 cut(s)	20, 284, 497, 535, 646
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	32, 358, 623
BsgI	GTGCAG	2 cut(s)	73, 622
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	178, 321
BsnI	GGCC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	574, 695
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	690, 703
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	5 cut(s)	20, 284, 497, 535, 646
BssAI	RCCGGY	1 cut(s)	292
BssMI	GATC	2 cut(s)	574, 695
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	94, 121, 151
Bst6I	CTCTTC	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	294, 376
BstDEI	CTNAG	2 cut(s)	35, 509
BstF5I	GGATG	4 cut(s)	311, 330, 341, 656
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	577, 698
BstMBI	GATC	2 cut(s)	574, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 51, 289
BstNSI	RCATGY	1 cut(s)	198
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	32, 358, 623
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	4 cut(s)	311, 330, 341, 656
BtsIMutI	CAGTG	2 cut(s)	90, 639
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	294, 376
CciI	TCATGA	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	122, 404, 703
CviAII	CATG	6 cut(s)	161, 173, 195, 236, 633, 700
CviQI	GTAC	3 cut(s)	122, 404, 703
DdeI	CTNAG	2 cut(s)	35, 509
DpnI	GATC	2 cut(s)	576, 697
DpnII	GATC	2 cut(s)	574, 695
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco32I	GATATC	2 cut(s)	302, 565
EcoRV	GATATC	2 cut(s)	302, 565
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	6 cut(s)	164, 176, 198, 239, 636, 703
FatI	CATG	6 cut(s)	160, 172, 194, 235, 632, 699
Fnu4HI	GCNGC	3 cut(s)	46, 372, 637
FokI	GGATG	4 cut(s)	298, 328, 337, 663
Fsp4HI	GCNGC	3 cut(s)	46, 372, 637
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	3 cut(s)	46, 372, 637
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	6 cut(s)	164, 176, 198, 239, 636, 703
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	252, 334, 450
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	3 cut(s)	76, 215, 239
HpyCH4III	ACNGT	3 cut(s)	94, 121, 151
HpyCH4V	TGCA	9 cut(s)	48, 90, 176, 214, 239, 341, 484, 620, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 51, 289
HpyF3I	CTNAG	2 cut(s)	35, 509
Hsp92II	CATG	6 cut(s)	164, 176, 198, 239, 636, 703
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	574, 695
LpnPI	CCDG	9 cut(s)	200, 265, 282, 306, 360, 453, 510, 516, 627
Lsp1109I	GCAGC	3 cut(s)	32, 358, 623
LweI	GCATC	3 cut(s)	32, 350, 595
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	61, 253
MalI	GATC	2 cut(s)	576, 697
MboI	GATC	2 cut(s)	574, 695
MboII	GAAGA	4 cut(s)	51, 149, 635, 673
MflI	RGATCY	1 cut(s)	695
MluCI	AATT	6 cut(s)	25, 285, 421, 471, 519, 595
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	12, 80, 108, 157, 242, 428
Mph1103I	ATGCAT	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	3 cut(s)	138, 228, 594
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	28, 51, 289
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	574, 695
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	6 cut(s)	164, 176, 198, 239, 636, 703
NlaIV	GGNNCC	1 cut(s)	697
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	2 cut(s)	61, 253
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	198
PagI	TCATGA	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	205
PciI	ACATGT	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	334, 450
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	47, 373, 638
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	3 cut(s)	123, 405, 704
RsaNI	GTAC	3 cut(s)	122, 404, 703
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	138, 228, 594
SatI	GCNGC	3 cut(s)	46, 372, 637
Sau3AI	GATC	2 cut(s)	574, 695
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	1 cut(s)	261
SetI	ASST	8 cut(s)	68, 144, 168, 219, 373, 418, 548, 708
SfaNI	GCATC	3 cut(s)	32, 350, 595
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	6 cut(s)	25, 285, 421, 471, 519, 595
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	94, 121, 151
TaqI	TCGA	1 cut(s)	433
TasI	AATT	6 cut(s)	25, 285, 421, 471, 519, 595
TatI	WGTACW	2 cut(s)	121, 403
TfiI	GAWTC	2 cut(s)	334, 450
Tru1I	TTAA	3 cut(s)	138, 228, 594
Tru9I	TTAA	3 cut(s)	138, 228, 594
TscAI	CASTG	2 cut(s)	97, 646
TseFI	GTSAC	2 cut(s)	61, 253
TseI	GCWGC	3 cut(s)	45, 371, 636
Tsp45I	GTSAC	2 cut(s)	61, 253
TspDTI	ATGAA	8 cut(s)	149, 224, 258, 300, 373, 442, 554, 661
TspRI	CASTG	2 cut(s)	97, 646
Van91I	CCANNNNNTGG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.