Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

22802485 .. 22804959

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGGCCTAATTGGGAACTCACAAACTGCTGCAACCACGAGCAAGTCGTCTTCCTCATCACCGTTGCTGTCTGCACTGTCGTCATACTTGCTCTTTGGAGGACAGTACTTCTGAGACCGTTCAAGCTTGTCACTGTGTTTCTTCACGAGGCGAGCCATGCTATTGCTTGTAAGCTTACATGTGGTCATGTGGAAGGGATTCAAGTTCATGCAGATGAGGGCGGAACCACACAAACCCGGGGTGGTGTATACTGGTTGATTTTGCCCGCTGGATATCTTGGTTCGTCCTTTTGGGGGATGCTCTTGATTCTTGCATCCACAAATCTCCTTACTGCTCGAATAGCTGCTGGGTGCTTTATTGCTGCTCTACTGATTGTACTGTGCATAGCTAAAAATTGGATGCTTCGAGGACTCTGTATAGGATTCATTGTTTTTCTCGGCGTAATTTGGGTTCTGCAAGAAACAACAACAGTTCGTGTGCTTCGGTACATTATTCTATTTATTGGTGTAATGAACAGCTTGTTTTCAGTCTATGATATCTATGACGATCTTATATCCCGTAGAGTTCGTTCTAGTGATGCCGAGAAATTTGCAGAAGAGTGTCCTTGCTGCACTGGCTGTGGATGGGGTGTCATCTGGTTACCAAATCCGGTAAAATTATTTGGCTGCTGCGAAGTTCCGACAGCACCATGTCCCGTGGCCGGCAATGGTCCGTGGCTGCCACCGCCCACGAGCGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

248

Amino Acids

27.13

Weight (kDa)

7.45

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	3 cut(s)	222, 267, 725
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	587
AfaI	GTAC	3 cut(s)	108, 378, 488
AfiI	CCNNNNNNNGG	2 cut(s)	294, 701
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	124, 203
AluBI	AGCT	5 cut(s)	127, 175, 344, 389, 519
AluI	AGCT	5 cut(s)	127, 175, 344, 389, 519
Alw26I	GTCTC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	2 cut(s)	5, 699
ApeKI	GCWGC	7 cut(s)	30, 344, 362, 609, 666, 669, 718
ApoI	RAATTY	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	1 cut(s)	710
AsuC2I	CCSGG	2 cut(s)	238, 239
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	710
BauI	CACGAG	3 cut(s)	38, 146, 730
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	7 cut(s)	17, 331, 349, 596, 653, 656, 705
BccI	CCATC	1 cut(s)	618
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BcnI	CCSGG	2 cut(s)	238, 239
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	738
BisI	GCNGC	7 cut(s)	31, 345, 363, 610, 667, 670, 719
BlsI	GCNGC	7 cut(s)	32, 346, 364, 611, 668, 671, 720
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	238, 239
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	238, 239
BmsI	GCATC	4 cut(s)	288, 323, 390, 568
BpiI	GAAGAC	1 cut(s)	43
BpuMI	CCSGG	2 cut(s)	238, 239
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	4 cut(s)	237, 238, 696, 713
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 701
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	2 cut(s)	257, 619
Bse3DI	GCAATG	1 cut(s)	712
BseDI	CCNNGG	4 cut(s)	237, 238, 696, 713
BseGI	GGATG	4 cut(s)	303, 314, 405, 629
BseLI	CCNNNNNNNGG	2 cut(s)	294, 701
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	257, 619
BseXI	GCAGC	7 cut(s)	17, 331, 349, 596, 653, 656, 705
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	2 cut(s)	58, 595
BshFI	GGCC	2 cut(s)	7, 701
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	238, 650, 702
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	2 cut(s)	294, 701
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	678
BsnI	GGCC	2 cut(s)	7, 701
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	3 cut(s)	222, 267, 725
BspANI	GGCC	2 cut(s)	7, 701
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	2 cut(s)	257, 619
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	4 cut(s)	237, 238, 696, 713
BssMI	GATC	1 cut(s)	547
BssNAI	GTATAC	1 cut(s)	250
BssSI	CACGAG	3 cut(s)	38, 146, 730
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	3 cut(s)	38, 146, 730
Bst4CI	ACNGT	7 cut(s)	64, 79, 106, 120, 136, 381, 472
Bst6I	CTCTTC	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	154, 267, 703
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	2 cut(s)	696, 713
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	4 cut(s)	303, 314, 405, 629
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 341, 615, 724
BstNSI	RCATGY	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	236, 237
BstV1I	GCAGC	7 cut(s)	17, 331, 349, 596, 653, 656, 705
BstV2I	GAAGAC	1 cut(s)	43
BstZ17I	GTATAC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	7, 701
BtgI	CCRYGG	2 cut(s)	696, 713
BtsCI	GGATG	4 cut(s)	303, 314, 405, 629
BtsIMutI	CAGTG	3 cut(s)	75, 132, 612
Cac8I	GCNNGC	3 cut(s)	154, 267, 703
CfoI	GCGC	1 cut(s)	737
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	710
Cfr9I	CCCGGG	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	107, 377, 487
CviAII	CATG	5 cut(s)	158, 180, 188, 209, 690
CviQI	GTAC	3 cut(s)	107, 377, 487
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	2 cut(s)	275, 538
Eco47I	GGWCC	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	639
EcoO65I	GGTNACC	1 cut(s)	639
EcoRV	GATATC	2 cut(s)	275, 538
FaeI	CATG	5 cut(s)	161, 183, 191, 212, 693
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	5 cut(s)	157, 179, 187, 208, 689
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	7 cut(s)	31, 345, 363, 610, 667, 670, 719
FokI	GGATG	4 cut(s)	301, 310, 412, 636
Fsp4HI	GCNGC	7 cut(s)	31, 345, 363, 610, 667, 670, 719
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	7 cut(s)	31, 345, 363, 610, 667, 670, 719
GsaI	CCCAGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	7, 701
HapII	CCGG	3 cut(s)	238, 650, 702
HhaI	GCGC	1 cut(s)	737
Hin1II	CATG	5 cut(s)	161, 183, 191, 212, 693
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HindIII	AAGCTT	2 cut(s)	125, 173
HinfI	GANTC	4 cut(s)	199, 307, 411, 423
HpaII	CCGG	3 cut(s)	238, 650, 702
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	114, 681
Hpy188III	TCNNGA	2 cut(s)	146, 304
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	7 cut(s)	64, 79, 106, 120, 136, 381, 472
HpyCH4V	TGCA	8 cut(s)	33, 75, 212, 314, 384, 457, 593, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 341, 615, 724
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	161, 183, 191, 212, 693
HspAI	GCGC	1 cut(s)	735
KroI	GCCGGC	1 cut(s)	701
KroNI	GCCGGC	1 cut(s)	703
Kzo9I	GATC	1 cut(s)	547
LpnPI	CCDG	8 cut(s)	238, 251, 255, 333, 600, 622, 663, 715
Lsp1109I	GCAGC	7 cut(s)	17, 331, 349, 596, 653, 656, 705
LweI	GCATC	4 cut(s)	288, 323, 390, 568
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	130, 639
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	3 cut(s)	43, 134, 608
MluCI	AATT	5 cut(s)	10, 394, 444, 587, 656
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	5 cut(s)	65, 93, 142, 211, 401
MroNI	GCCGGC	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	238, 650, 702
MspR9I	CCNGG	2 cut(s)	238, 239
MwoI	GCNNNNNNNGC	4 cut(s)	158, 341, 615, 724
NaeI	GCCGGC	1 cut(s)	703
NciI	CCSGG	2 cut(s)	238, 239
NdeII	GATC	1 cut(s)	547
NgoMIV	GCCGGC	1 cut(s)	701
NlaIII	CATG	5 cut(s)	161, 183, 191, 212, 693
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	2 cut(s)	417, 607
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	7
PciI	ACATGT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	199, 307, 423
PkrI	GCNGC	7 cut(s)	32, 346, 364, 611, 668, 671, 720
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PscI	ACATGT	1 cut(s)	179
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	710
PsrI	GAACNNNNNNTAC	4 cut(s)	435, 467, 553, 585
RsaI	GTAC	3 cut(s)	108, 378, 488
RsaNI	GTAC	3 cut(s)	107, 377, 487
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	7 cut(s)	31, 345, 363, 610, 667, 670, 719
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	1 cut(s)	710
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	238, 239
SetI	ASST	5 cut(s)	129, 177, 346, 391, 521
SfaNI	GCATC	4 cut(s)	288, 323, 390, 568
SinI	GGWCC	1 cut(s)	710
SmaI	CCCGGG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	10, 394, 444, 587, 656
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	222, 267, 725
SspMI	CTAG	1 cut(s)	573
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	236, 237
TaaI	ACNGT	7 cut(s)	64, 79, 106, 120, 136, 381, 472
TaqI	TCGA	2 cut(s)	337, 406
TasI	AATT	5 cut(s)	10, 394, 444, 587, 656
TatI	WGTACW	2 cut(s)	106, 376
TfiI	GAWTC	3 cut(s)	199, 307, 423
TscAI	CASTG	3 cut(s)	82, 139, 619
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	7 cut(s)	30, 344, 362, 609, 666, 669, 718
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	197, 415, 527
TspGWI	ACGGA	1 cut(s)	702
TspMI	CCCGGG	1 cut(s)	237
TspRI	CASTG	3 cut(s)	82, 139, 619
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	587
XceI	RCATGY	1 cut(s)	183
XmaI	CCCGGG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	573
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.