Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

22806572 .. 22808188

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGGCAACGCCAATGCCACATGAAAATTTCTTGCAGTATTTGGTTTCCTAAAAAAGGAGAAGAGATGGAGTTGAATTTGAATTTCATGAAATGGAGGCCAAATTGGCAACTCAGAAAATGCTGCAACCACGACCAAGTAATCTTCCTCATCTCCGTTGCTGTCTGCACTGTTGTTATACTTGTGCTGTGGAGGACAGTGCTGATGACACCTTTCAAGCTTATAACCGTGTTCCTTCACGAGGTGAGCCATGCAATCGCTTGTCTGCTTACATGTGGTAAGGTGGAAGGGATTAAAGTTCAGGCAGATGAAGGTGGAGTCACACAAACCCGTGGCGGCATATCCTGGATAATTTTGCCAGCCGGATATCTTGGTTCATCGTTTTGGGGGATGATATTGATTCTTGCATCTACGAAGCATCTCACTACACAAATCGCTGCTGGCTGTTTCATCGTTGCCCTAATTATTGTATTCTTTTTAGCTAAAAATGTAAGTCATATGGACGCTTCGAGGACTTTGCATCGGTATGGATTCCGTATTTCATCAAAACATCGTCCTGTTACTACTAGCACACGATGCAATTTGACGTTTGGGGTTTTGTTTATGTTTTACGGTGTTGAACTACCAGGATTCATTGTTTTATTTGCTGCAATTTGGTATCTGCAAGAAGCAACGCCGGTTCATATGCTTAGGGAAGTGATTCTGTTCACCGGTAATTGCATCTCCGCTATTTTCGTTCAACTATTTCTTGAGAAAGTAGCTTATATATTCTTCATTTCGTCTGACGCTTTATTTTATCTAATGATAGGTGTGATGAACAGCTTGTTTTCGGTGTATGATATATACGATGATCTTATATCGCGGAGAATTAATACGAGTGATGCTGAAAGATTTGCAGATGAGTGTCCCTGCTGTACTGGATGTGGATGGGGTGTCATTTGGGCGTTCATATCTTTCACATATCTCTGTGGATCTGTGTACCTTGCTCTTGTGATCTTGTCTCCACGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

338

Amino Acids

38.11

Weight (kDa)

8.59

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AccII	CGCG	1 cut(s)	862
AciI	CCGC	3 cut(s)	336, 726, 862
AclWI	GGATC	1 cut(s)	979
AcsI	RAATTY	3 cut(s)	27, 76, 82
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	916, 980
AfiI	CCNNNNNNNGG	2 cut(s)	56, 241
AflIII	ACRYGT	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	710
AgsI	TTSAA	5 cut(s)	76, 82, 217, 620, 740
AjiI	CACGTC	1 cut(s)	1007
AjnI	CCWGG	2 cut(s)	344, 625
AleI	CACNNNNGTG	1 cut(s)	1009
AluBI	AGCT	4 cut(s)	220, 482, 761, 822
AluI	AGCT	4 cut(s)	220, 482, 761, 822
Alw26I	GTCTC	1 cut(s)	1005
AlwI	GGATC	1 cut(s)	979
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	123, 437, 647
ApoI	RAATTY	3 cut(s)	27, 76, 82
AseI	ATTAAT	1 cut(s)	870
AsiGI	ACCGGT	1 cut(s)	710
Asp700I	GAANNNNTTC	1 cut(s)	699
AsuHPI	GGTGA	2 cut(s)	256, 700
BauI	CACGAG	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	110, 424, 634
BccI	CCATC	2 cut(s)	61, 921
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	2 cut(s)	346, 627
BcoDI	GTCTC	1 cut(s)	1005
BfaI	CTAG	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	124, 337, 438, 648
BlsI	GCNGC	4 cut(s)	125, 338, 439, 649
Bme1390I	CCNGG	2 cut(s)	346, 627
BmgBI	CACGTC	1 cut(s)	1007
BmrFI	CCNGG	2 cut(s)	346, 627
BmsI	GCATC	6 cut(s)	416, 427, 529, 566, 729, 871
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	770
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 241
Bse118I	RCCGGY	2 cut(s)	676, 710
Bse1I	ACTGG	1 cut(s)	922
BseBI	CCWGG	2 cut(s)	346, 627
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	3 cut(s)	396, 926, 932
BseLI	CCNNNNNNNGG	2 cut(s)	56, 241
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	922
BseXI	GCAGC	3 cut(s)	110, 424, 634
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	862
BshFI	GGCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	710
BsiSI	CCGG	3 cut(s)	363, 677, 711
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	2 cut(s)	56, 241
BsmAI	GTCTC	1 cut(s)	1005
BsmFI	GGGAC	1 cut(s)	891
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	850, 971, 993
BspACI	CCGC	3 cut(s)	336, 726, 862
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	862
BspHI	TCATGA	1 cut(s)	87
BspPI	GGATC	1 cut(s)	979
BsrFI	RCCGGY	2 cut(s)	676, 710
BsrI	ACTGG	1 cut(s)	922
BssAI	RCCGGY	2 cut(s)	676, 710
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	850, 971, 993
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	2 cut(s)	346, 627
Bst4CI	ACNGT	4 cut(s)	172, 199, 229, 614
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	360, 442
BstDEI	CTNAG	2 cut(s)	113, 689
BstDSI	CCRYGG	1 cut(s)	331
BstENI	CCTNNNNNAGG	2 cut(s)	54, 239
BstF5I	GGATG	3 cut(s)	396, 926, 932
BstFNI	CGCG	1 cut(s)	862
BstKTI	GATC	3 cut(s)	853, 974, 996
BstMAI	GTCTC	1 cut(s)	1005
BstMBI	GATC	3 cut(s)	850, 971, 993
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 576
BstNI	CCWGG	2 cut(s)	346, 627
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	344, 625
BstUI	CGCG	1 cut(s)	862
BstV1I	GCAGC	3 cut(s)	110, 424, 634
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	1007
BtsCI	GGATG	3 cut(s)	396, 926, 932
BtsIMutI	CAGTG	2 cut(s)	168, 204
Cac8I	GCNNGC	2 cut(s)	360, 442
CciI	TCATGA	1 cut(s)	87
Cfr10I	RCCGGY	2 cut(s)	676, 710
CseI	GACGC	2 cut(s)	512, 794
Csp6I	GTAC	2 cut(s)	915, 979
CspAI	ACCGGT	1 cut(s)	710
CviAII	CATG	4 cut(s)	22, 88, 251, 273
CviJI	RGCY	8 cut(s)	100, 220, 249, 362, 444, 482, 761, 822
CviKI_1	RGCY	8 cut(s)	100, 220, 249, 362, 444, 482, 761, 822
CviQI	GTAC	2 cut(s)	915, 979
DdeI	CTNAG	2 cut(s)	113, 689
DpnI	GATC	3 cut(s)	852, 973, 995
DpnII	GATC	3 cut(s)	850, 971, 993
DraIII	CACNNNGTG	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	2 cut(s)	54, 239
EcoRII	CCWGG	2 cut(s)	344, 625
EcoRV	GATATC	1 cut(s)	368
FaeI	CATG	4 cut(s)	25, 91, 254, 276
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	4 cut(s)	21, 87, 250, 272
FauNDI	CATATG	2 cut(s)	498, 684
Fnu4HI	GCNGC	4 cut(s)	124, 337, 438, 648
FokI	GGATG	3 cut(s)	403, 933, 939
Fsp4HI	GCNGC	4 cut(s)	124, 337, 438, 648
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	4 cut(s)	124, 337, 438, 648
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	3 cut(s)	363, 677, 711
HgaI	GACGC	2 cut(s)	512, 794
Hin1II	CATG	4 cut(s)	25, 91, 254, 276
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	5 cut(s)	318, 400, 531, 630, 700
HpaII	CCGG	3 cut(s)	363, 677, 711
HphI	GGTGA	2 cut(s)	256, 700
Hpy166II	GTNNAC	2 cut(s)	708, 979
Hpy188I	TCNGA	2 cut(s)	116, 784
Hpy188III	TCNNGA	3 cut(s)	88, 239, 749
Hpy8I	GTNNAC	2 cut(s)	708, 979
HpyAV	CCTTC	3 cut(s)	245, 281, 305
HpyCH4III	ACNGT	4 cut(s)	172, 199, 229, 614
HpyCH4IV	ACGT	2 cut(s)	587, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 576
HpyF3I	CTNAG	2 cut(s)	113, 689
HpySE526I	ACGT	2 cut(s)	587, 1006
Hsp92II	CATG	4 cut(s)	25, 91, 254, 276
Kzo9I	GATC	3 cut(s)	850, 971, 993
Lsp1109I	GCAGC	3 cut(s)	110, 424, 634
LweI	GCATC	6 cut(s)	416, 427, 529, 566, 729, 871
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	2 cut(s)	587, 1006
MaeIII	GTNAC	2 cut(s)	319, 559
MalI	GATC	3 cut(s)	852, 973, 995
MboI	GATC	3 cut(s)	850, 971, 993
MboII	GAAGA	3 cut(s)	74, 136, 763
MflI	RGATCY	1 cut(s)	971
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	5 cut(s)	90, 158, 186, 235, 504
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	2 cut(s)	294, 870
MslI	CAYNNNNRTG	2 cut(s)	525, 1009
MspI	CCGG	3 cut(s)	363, 677, 711
MspR9I	CCNGG	2 cut(s)	346, 627
MvaI	CCWGG	2 cut(s)	346, 627
MvnI	CGCG	1 cut(s)	862
MwoI	GCNNNNNNNGC	2 cut(s)	106, 576
NdeI	CATATG	2 cut(s)	498, 684
NdeII	GATC	3 cut(s)	850, 971, 993
NlaIII	CATG	4 cut(s)	25, 91, 254, 276
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	1009
PagI	TCATGA	1 cut(s)	87
PciI	ACATGT	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	400, 531, 630, 700
PfoI	TCCNGGA	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	125, 338, 439, 649
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PscI	ACATGT	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	344, 625
PspGI	CCWGG	2 cut(s)	344, 625
PsuI	RGATCY	1 cut(s)	971
RsaI	GTAC	2 cut(s)	916, 980
RsaNI	GTAC	2 cut(s)	915, 979
RseI	CAYNNNNRTG	2 cut(s)	525, 1009
SaqAI	TTAA	2 cut(s)	294, 870
SatI	GCNGC	4 cut(s)	124, 337, 438, 648
Sau3AI	GATC	3 cut(s)	850, 971, 993
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	346, 627
SfaNI	GCATC	6 cut(s)	416, 427, 529, 566, 729, 871
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1009
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SsiI	CCGC	3 cut(s)	336, 726, 862
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	344, 625
TaaI	ACNGT	4 cut(s)	172, 199, 229, 614
TaiI	ACGT	2 cut(s)	590, 1009
TaqI	TCGA	1 cut(s)	509
TatI	WGTACW	1 cut(s)	914
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	4 cut(s)	400, 531, 630, 700
Tru1I	TTAA	2 cut(s)	294, 870
Tru9I	TTAA	2 cut(s)	294, 870
TscAI	CASTG	2 cut(s)	175, 204
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	123, 437, 647
Tsp45I	GTSAC	1 cut(s)	319
TspGWI	ACGGA	2 cut(s)	145, 524
TspRI	CASTG	2 cut(s)	175, 204
VspI	ATTAAT	1 cut(s)	870
XagI	CCTNNNNNAGG	2 cut(s)	54, 239
XapI	RAATTY	3 cut(s)	27, 76, 82
XceI	RCATGY	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.