Rorug02G0261000

Peptidase M50B-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
27375169 .. 27375405
237 bp
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UTR
Exon/CDS
Intron
Rorug02G0261000.1

Sequence Viewer

Length: 237 bp
ATGGATTTGGATATTCGAAGTTGGAATTGCAGAGGGATCTGCAACGATACTACTACGAGGGCACTGAAAGATTTGATATCTCAAAATCGTCCTCAAATTGTTTTTATCTGCCAAACCAAAATCAGTAATCTATCTGATTTCAAAGCATTACACGCTACTTTAGGGTTTCCTAATTCCCGGGAGGTTCTAAGTGATGAGCGGTCTGGTGGATGGGAATGTTTTGGAGTGATGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

6.53

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 199
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 44
AgsI TTSAA 1 cut(s) 142
AjiI CACGTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 177
AsuC2I CCSGG 2 cut(s) 178, 179
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 64
BccI CCATC 1 cut(s) 204
BcnI CCSGG 2 cut(s) 178, 179
Bme1390I CCNGG 2 cut(s) 178, 179
BmeT110I CYCGRG 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 178, 179
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 2 cut(s) 178, 179
BsaJI CCNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 177
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 199
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 36
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 176, 177
BstSLI GKGCMC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 62
Cfr9I CCCGGG 1 cut(s) 177
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 78
FokI GGATG 1 cut(s) 222
HapII CCGG 1 cut(s) 178
HpaII CCGG 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 30, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 233
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 2 cut(s) 189, 191
MaeII ACGT 1 cut(s) 233
MalI GATC 1 cut(s) 38
MbiI CCGCTC 1 cut(s) 199
MboI GATC 1 cut(s) 36
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 25, 96, 172
MnlI CCTC 4 cut(s) 26, 51, 102, 175
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 178, 179
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 2 cut(s) 178, 179
NdeII GATC 1 cut(s) 36
NspV TTCGAA 1 cut(s) 16
PsuI RGATCY 1 cut(s) 36
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 178, 179
SduI GDGCHC 1 cut(s) 64
SetI ASST 2 cut(s) 186, 236
SfuI TTCGAA 1 cut(s) 16
SgeI CNNG 6 cut(s) 69, 164, 189, 190, 191, 216
SmaI CCCGGG 1 cut(s) 179
Sse9I AATT 3 cut(s) 25, 96, 172
SsiI CCGC 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 176, 177
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 25, 96, 172
TscAI CASTG 1 cut(s) 69
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 1 cut(s) 69
XmaI CCCGGG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.