Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001267

Physical Location & Seq

Genomic Coordinates Reverse (-)

5355539 .. 5358286

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGACATTTTGGACTTGAGGATAAATTGGGAACTCAGAAGATGCTGCAACCATGATCAAGTGATATTTCTGATCACTACTGCTATCTCCATTGTCATTATACTTGTGCTGTGGAGGACAGTAGTGATGACACCATTTAAACTTATAACTGTGTTTCTCCATGAGGTGAGCCATGCTTTGGCTTGTTGGTTTACATGTGGGAAGGTGGAAGGGATTAAAGTTCATGCAGATGAAGGTGGAGTCACACAAACCCGTGGCGGTGTATACTGGTTAATTTTGCCAGCAGGATATCTTGGTTCATCCTTTTGGGGGATGGCATTGATTCTTGCATCTACGAAAGGAATTACTGCACAAATAGCTGCCGGGTGTTTTACTGTTGCTCTAGTTGTTGTGCTCTTCTTAGCTAAAAATTGGACACTTCGAGGCCTTTGTCTAGGTTTCCTCTTTTTCTTTGGTCTAATTTGGTATCTCCAAGTATACACACCTGTTCGTATGCTACGTGAAGTGATTCTGTTTACTGGTGTAATGAACAGCTTGTTTTCAGTTTATGATATCTACGACGATCTCATATCCCGTAGAATCAATTCCAGTGATGCTGAGAAATTTGCAGAAGAGTGTCCTTGCTGTACTGGTTGTGGTTGGGGTGTCATTTGGGGTTTCTTTTCTTTTGTGTATCTTTGTGTGGCTCTGTACCTTGCTCTTGTGATTTTGGCTAATAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M50B

Protein Analysis

241

Amino Acids

27.14

Weight (kDa)

7.99

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50B	PF13398	30 - 228	1.6e-54	Peptidase M50B-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67060 AT1G67060 AT1G67060
fragaria_vesca	FvH4_3g34180 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_5g11892 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690 FvH4_7g13690
malus_domestica	MD06G1217400.v1.1 MD06G1217500.v1.1 MD09G1253200.v1.1 MD14G1227700.v1.1
prunus_persica	Prupe.3G143000_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222600_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1 Prupe.5G222700_v2.0.a1
pyrus_communis	pycom06g19370 pycom06g19380
rosa_chinensis	RchiOBHm_Chr2g0126081 RchiOBHm_Chr7g0185671 RchiOBHm_Chr7g0185681
rosa_multiflora	Rmu_sc0001506.1_g000004 Rmu_sc0008747.1_g000002 Rmu_sc0010190.1_g000003
rosa_roxburghii	Rroxscaffold_3G00268740
rosa_rugosa	Rorug02G0260800 Rorug02G0260900 Rorug02G0261000 Rorug06G0470300 Rorug06G0470400
rosa_samantha	Rh2BG326600 Rh2DG344700 Rh7AG072000 Rh7AG072100 Rh7BG075800 Rh7BG075900 Rh7CG075900 Rh7DG075800 Rh7DG075900
rosa_wichuraiana	Rw2G025770 Rw7G006310 Rw7G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	264, 477
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	602
AfaI	GTAC	2 cut(s)	628, 692
AfiI	CCNNNNNNNGG	2 cut(s)	178, 309
AflIII	ACRYGT	1 cut(s)	194
AluBI	AGCT	3 cut(s)	359, 404, 534
AluI	AGCT	3 cut(s)	359, 404, 534
Alw21I	GWGCWC	1 cut(s)	396
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	45, 359
ApoI	RAATTY	1 cut(s)	602
Asp700I	GAANNNNTTC	2 cut(s)	507, 583
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	32, 346
BccI	CCATC	1 cut(s)	307
BclI	TGATCA	2 cut(s)	55, 72
BcnI	CCSGG	1 cut(s)	364
BfaI	CTAG	2 cut(s)	383, 434
BisI	GCNGC	2 cut(s)	46, 360
BlsI	GCNGC	2 cut(s)	47, 361
Bme1390I	CCNGG	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	32, 338, 583
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 309
Bse1I	ACTGG	4 cut(s)	272, 523, 588, 634
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	299, 318
BseLI	CCNNNNNNNGG	2 cut(s)	178, 309
BseMII	CTCAG	2 cut(s)	49, 588
BseNI	ACTGG	4 cut(s)	272, 523, 588, 634
BseXI	GCAGC	2 cut(s)	32, 346
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	178, 309
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	55, 72, 562
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	48, 589
BspQI	GCTCTTC	1 cut(s)	401
BsrI	ACTGG	4 cut(s)	272, 523, 588, 634
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	55, 72, 562
BssNAI	GTATAC	2 cut(s)	265, 478
Bst1107I	GTATAC	2 cut(s)	265, 478
Bst4CI	ACNGT	3 cut(s)	121, 151, 376
Bst6I	CTCTTC	2 cut(s)	401, 606
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	35, 400, 597
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	299, 318
BstKTI	GATC	3 cut(s)	58, 75, 565
BstMBI	GATC	3 cut(s)	55, 72, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	32, 346
BstZ17I	GTATAC	2 cut(s)	265, 478
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	299, 318
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	627, 691
CviAII	CATG	5 cut(s)	53, 161, 173, 195, 224
CviJI	RGCY	8 cut(s)	171, 182, 359, 404, 426, 534, 686, 713
CviKI_1	RGCY	8 cut(s)	171, 182, 359, 404, 426, 534, 686, 713
CviQI	GTAC	2 cut(s)	627, 691
DdeI	CTNAG	3 cut(s)	35, 400, 597
DpnI	GATC	3 cut(s)	57, 74, 564
DpnII	GATC	3 cut(s)	55, 72, 562
DraI	TTTAAA	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	401, 606
EarI	CTCTTC	2 cut(s)	401, 606
Eco147I	AGGCCT	1 cut(s)	426
Eco32I	GATATC	2 cut(s)	290, 553
EcoRV	GATATC	2 cut(s)	290, 553
FaeI	CATG	5 cut(s)	56, 164, 176, 198, 227
FatI	CATG	5 cut(s)	52, 160, 172, 194, 223
FbaI	TGATCA	2 cut(s)	55, 72
FblI	GTMKAC	2 cut(s)	264, 477
Fnu4HI	GCNGC	2 cut(s)	46, 360
FokI	GGATG	2 cut(s)	286, 325
Fsp4HI	GCNGC	2 cut(s)	46, 360
FspBI	CTAG	2 cut(s)	383, 434
GluI	GCNGC	2 cut(s)	46, 360
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	5 cut(s)	56, 164, 176, 198, 227
HinfI	GANTC	4 cut(s)	240, 322, 508, 579
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	4 cut(s)	192, 265, 478, 516
Hpy188I	TCNGA	2 cut(s)	38, 72
Hpy8I	GTNNAC	4 cut(s)	192, 265, 478, 516
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	3 cut(s)	196, 203, 227
HpyCH4III	ACNGT	3 cut(s)	121, 151, 376
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	48, 227, 329, 350, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	35, 400, 597
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	5 cut(s)	56, 164, 176, 198, 227
Ksp22I	TGATCA	2 cut(s)	55, 72
Kzo9I	GATC	3 cut(s)	55, 72, 562
LguI	GCTCTTC	1 cut(s)	401
LpnPI	CCDG	8 cut(s)	253, 270, 294, 376, 498, 504, 601, 615
Lsp1109I	GCAGC	2 cut(s)	32, 346
LweI	GCATC	3 cut(s)	32, 338, 583
MaeI	CTAG	2 cut(s)	383, 434
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	57, 74, 564
MboI	GATC	3 cut(s)	55, 72, 562
MboII	GAAGA	3 cut(s)	51, 388, 623
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	7 cut(s)	25, 273, 342, 409, 459, 583, 602
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	5 cut(s)	12, 108, 157, 416, 452
MroXI	GAANNNNTTC	2 cut(s)	507, 583
MseI	TTAA	3 cut(s)	138, 216, 272
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	3 cut(s)	55, 72, 562
NlaIII	CATG	5 cut(s)	56, 164, 176, 198, 227
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	426
PciI	ACATGT	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	507, 583
PfeI	GAWTC	3 cut(s)	322, 508, 579
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	47, 361
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	500
PscI	ACATGT	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	146
RsaI	GTAC	2 cut(s)	628, 692
RsaNI	GTAC	2 cut(s)	627, 691
RseI	CAYNNNNRTG	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	3 cut(s)	138, 216, 272
SatI	GCNGC	2 cut(s)	46, 360
Sau3AI	GATC	3 cut(s)	55, 72, 562
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	32, 338, 583
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	7 cut(s)	25, 273, 342, 409, 459, 583, 602
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	383, 434
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	121, 151, 376
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	421
TasI	AATT	7 cut(s)	25, 273, 342, 409, 459, 583, 602
TatI	WGTACW	1 cut(s)	626
TfiI	GAWTC	3 cut(s)	322, 508, 579
Tru1I	TTAA	3 cut(s)	138, 216, 272
Tru9I	TTAA	3 cut(s)	138, 216, 272
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	45, 359
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	212, 246, 288, 542
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	198
XmiI	GTMKAC	2 cut(s)	264, 477
XmnI	GAANNNNTTC	2 cut(s)	507, 583
XspI	CTAG	2 cut(s)	383, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.