Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003424

Physical Location & Seq

Genomic Coordinates Reverse (-)

30957130 .. 30960198

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36111.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCCGCGAACAATAGGGTGCACAGTAGTGCTGCCCTTCAAACCCATGGCATATGGCAGAGTGCAATTGGGTACGATCCCTATGCGCCCACCAAAGACAGAGATGATTCTAGGAGCACTACTCATATGAATGTGGCGAGCTCTGAACTGGATGCTGAGAATCCGTATGCTAGCTTCCAGGGCCTCCTTGCGCTTGCCCGTATAACTGGGTCGAACGCTGACGAGGCTCGCGGGGCGTGCAAGAGGTGTGGCCGTGTTGGGCATCTCAGCTTTCAGTGCAGGAACTTTCTTAGTGTCAAGGATGACAAGGAGAAGGACCCGGAGGCTATTCAGTCTGATGTTGCTTCTGAGTTGAGGAAGTTGAGGGGGAAGCTGGGTAAGGGTGTTGGGAAAGATGTGGTGGAGACTGATAGTGATGAGGAGGATGAAGACACTGAGGATTCGGATTCGGACTATGATTCCGAGATTGAGAGGATCATTGCTCAGAAAAATGGGAAAAGGAGTGTCCGAAAGGAGAAGTCGAAGAAGAAGAAGAATGAGGAGTCGGATGTTGATGAGTCGGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAACAAGAGGAAACATGATGATTCTGATGACTCGGAAGAAGATAGGAAGATAAGGAGAAAGGAGAAACGGAGGAAGAGGGACGAGTCCTCTGATGAAGATGGTAAACGACATCGGCGACATAGGAAGAGTAGGACGGAGAAAAGGAGGAGGAGGAGTCATCGGTATTCTGATGATTCTGAGTCTGATACATCTGAAGATAGACACCGCAGTCGGAGGAGCAAGAGGGGGGCAACACCATCTGATTCTGATGCTAGTGGCTCTGATGATGCGCGGGTAGGAAGGGGCAGGAAACGATCTGAGAAGAAGAGCCGGAAACACCACCGTGATGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

326

Amino Acids

37.21

Weight (kDa)

9.55

Isoelectric Point (pI)

79.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28910 AT2G28910 AT2G28910
fragaria_vesca	FvH4_3g36111 FvH4_3g36111
malus_domestica	MD03G1093300.v1.1 MD11G1107700.v1.1 MD11G1108100.v1.1
prunus_persica	Prupe.6G077300_v2.0.a1
pyrus_communis	pycom03g07480 pycom11g08930
rosa_chinensis	RchiOBHm_Chr5g0064541 RchiOBHm_Chr5g0064551 RchiOBHm_Chr5g0064811 RchiOBHm_Chr5g0064841
rosa_laevigata	RLG00000001342 RLG00000035732 RLG00000035734 RLG00000035736
rosa_roxburghii	Rroxscaffold_1G00016450 Rroxscaffold_1G00016480 Rroxscaffold_6G00399790 Rroxscaffold_6G00400120
rosa_rugosa	Rorug05G0366000 Rorug05G0366100 Rorug05G0366500
rosa_samantha	Rh3CG275300 Rh3DG272600 Rh5AG424000 Rh5BG439400 Rh5CG462000 Rh5CG462100 Rh5DG452700 Rh5DG452900
rosa_wichuraiana	Rw5G039860 Rw5G039880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	849
AccII	CGCG	3 cut(s)	35, 258, 913
AciI	CCGC	5 cut(s)	12, 33, 258, 847, 913
AclWI	GGATC	2 cut(s)	98, 509
AcoI	YGGCCR	2 cut(s)	6, 277
AcuI	CTGAAG	1 cut(s)	855
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	204
AleI	CACNNNNGTG	2 cut(s)	54, 963
AluBI	AGCT	4 cut(s)	168, 201, 297, 400
AluI	AGCT	4 cut(s)	168, 201, 297, 400
Alw21I	GWGCWC	3 cut(s)	51, 146, 170
Alw26I	GTCTC	1 cut(s)	425
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	98, 509
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	6, 208, 277
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	3 cut(s)	115, 220, 913
AspS9I	GGNCC	2 cut(s)	208, 343
AsuC2I	CCSGG	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	170
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	3 cut(s)	51, 146, 170
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	734, 886
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	3 cut(s)	138, 198, 894
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	206, 347
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	208, 343
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	206, 347
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	4 cut(s)	169, 298, 880, 898
BmtI	GCTAGC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	73, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	180, 238
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	73, 205
BseGI	GGATG	4 cut(s)	184, 334, 457, 580
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	7 cut(s)	174, 307, 366, 453, 524, 810, 930
BseNI	ACTGG	2 cut(s)	180, 238
BseRI	GAGGAG	7 cut(s)	461, 581, 649, 802, 805, 808, 871
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	325
Bsh1236I	CGCG	3 cut(s)	35, 258, 913
BshFI	GGCC	3 cut(s)	8, 210, 279
BsiHKAI	GWGCWC	3 cut(s)	51, 146, 170
BsiSI	CCGG	3 cut(s)	5, 347, 952
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	734
BsnI	GGCC	3 cut(s)	8, 210, 279
Bsp1286I	GDGCHC	3 cut(s)	51, 146, 170
Bsp143I	GATC	3 cut(s)	103, 501, 935
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	5 cut(s)	12, 33, 258, 847, 913
BspANI	GGCC	3 cut(s)	8, 210, 279
BspCNI	CTCAG	7 cut(s)	175, 306, 367, 454, 523, 811, 931
BspFNI	CGCG	3 cut(s)	35, 258, 913
BspLI	GGNNCC	1 cut(s)	345
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	98, 509
BspQI	GCTCTTC	1 cut(s)	941
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	180, 238
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	73, 205
BssMI	GATC	3 cut(s)	103, 501, 935
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	53, 965
Bst6I	CTCTTC	5 cut(s)	608, 626, 710, 761, 941
BstC8I	GCNNGC	8 cut(s)	6, 29, 33, 166, 199, 222, 256, 265
BstDEI	CTNAG	8 cut(s)	183, 293, 317, 375, 462, 510, 819, 939
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	4 cut(s)	184, 334, 457, 580
BstFNI	CGCG	3 cut(s)	35, 258, 913
BstHHI	GCGC	3 cut(s)	115, 220, 913
BstKTI	GATC	3 cut(s)	106, 504, 938
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	3 cut(s)	103, 501, 935
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 251, 260, 264, 303
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	204, 345
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	3 cut(s)	35, 258, 913
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	3 cut(s)	8, 210, 279
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	184, 334, 457, 580
BtsIMutI	CAGTG	2 cut(s)	308, 459
Cac8I	GCNNGC	8 cut(s)	6, 29, 33, 166, 199, 222, 256, 265
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	3 cut(s)	115, 220, 913
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	208, 343
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	3 cut(s)	28, 74, 656
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	8 cut(s)	183, 293, 317, 375, 462, 510, 819, 939
DpnI	GATC	3 cut(s)	105, 503, 937
DpnII	GATC	3 cut(s)	103, 501, 935
DrdI	GACNNNNNNGTC	1 cut(s)	849
DseDI	GACNNNNNNGTC	1 cut(s)	849
EaeI	YGGCCR	2 cut(s)	6, 277
Eam1104I	CTCTTC	5 cut(s)	608, 626, 710, 761, 941
EarI	CTCTTC	5 cut(s)	608, 626, 710, 761, 941
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	855
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	2 cut(s)	208, 343
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	3 cut(s)	31, 77, 659
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	3 cut(s)	27, 73, 655
FauI	CCCGC	3 cut(s)	40, 251, 906
FauNDI	CATATG	2 cut(s)	80, 153
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	4 cut(s)	191, 341, 464, 587
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	3 cut(s)	138, 198, 894
GlaI	GCGC	3 cut(s)	114, 219, 912
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	8, 210, 279
HapII	CCGG	3 cut(s)	5, 347, 952
HhaI	GCGC	3 cut(s)	115, 220, 913
Hin1II	CATG	3 cut(s)	31, 77, 659
Hin6I	GCGC	3 cut(s)	113, 218, 911
HinP1I	GCGC	3 cut(s)	113, 218, 911
HpaII	CCGG	3 cut(s)	5, 347, 952
Hpy166II	GTNNAC	2 cut(s)	49, 746
Hpy8I	GTNNAC	2 cut(s)	49, 746
HpyAV	CCTTC	5 cut(s)	12, 74, 334, 615, 915
HpyCH4III	ACNGT	2 cut(s)	53, 965
HpyCH4V	TGCA	4 cut(s)	49, 92, 267, 306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 251, 260, 264, 303
HpyF3I	CTNAG	8 cut(s)	183, 293, 317, 375, 462, 510, 819, 939
Hsp92II	CATG	3 cut(s)	31, 77, 659
HspAI	GCGC	3 cut(s)	113, 218, 911
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	103, 501, 935
LguI	GCTCTTC	1 cut(s)	941
LmnI	GCTCC	2 cut(s)	141, 858
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	4 cut(s)	169, 298, 880, 898
MaeI	CTAG	3 cut(s)	138, 198, 894
MalI	GATC	3 cut(s)	105, 503, 937
MboI	GATC	3 cut(s)	103, 501, 935
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	51, 146, 170
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	6 cut(s)	578, 593, 665, 734, 805, 830
MmeI	TCCRAC	3 cut(s)	552, 567, 833
MroNI	GCCGGC	1 cut(s)	4
MslI	CAYNNNNRTG	4 cut(s)	54, 156, 963, 966
MspI	CCGG	3 cut(s)	5, 347, 952
MspR9I	CCNGG	2 cut(s)	206, 347
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	3 cut(s)	35, 258, 913
MwoI	GCNNNNNNNGC	5 cut(s)	207, 251, 260, 264, 303
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	73
NdeI	CATATG	2 cut(s)	80, 153
NdeII	GATC	3 cut(s)	103, 501, 935
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	3 cut(s)	31, 77, 659
NlaIV	GGNNCC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	31
OliI	CACNNNNGTG	2 cut(s)	54, 963
PaeI	GCATGC	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	754
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	9 cut(s)	134, 187, 467, 473, 485, 596, 662, 815, 884
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	6 cut(s)	577, 592, 665, 733, 804, 829
PpsI	GAGTC	6 cut(s)	577, 592, 665, 733, 804, 829
PpuMI	RGGWCCY	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	208, 343
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	4 cut(s)	54, 156, 963, 966
SacI	GAGCTC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	941
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	103, 501, 935
Sau96I	GGNCC	2 cut(s)	208, 343
SchI	GAGTC	6 cut(s)	578, 593, 665, 734, 805, 830
ScrFI	CCNGG	2 cut(s)	206, 347
SduI	GDGCHC	3 cut(s)	51, 146, 170
SetI	ASST	6 cut(s)	170, 203, 275, 299, 402, 626
SfaNI	GCATC	4 cut(s)	169, 298, 880, 898
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	4 cut(s)	54, 156, 963, 966
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	5 cut(s)	12, 33, 258, 847, 913
SspMI	CTAG	3 cut(s)	138, 198, 894
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	204, 345
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	53, 965
TaqI	TCGA	3 cut(s)	239, 548, 626
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	9 cut(s)	134, 187, 467, 473, 485, 596, 662, 815, 884
TscAI	CASTG	2 cut(s)	308, 466
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	170, 468, 750
TspGWI	ACGGA	3 cut(s)	180, 724, 791
TspRI	CASTG	2 cut(s)	308, 466
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	343
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	3 cut(s)	138, 198, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.